Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq25706 109 4e-19 seq25310 104 2e-17 seq25573 95.1 9e-15 seq25319 95.1 9e-15 seq25716 89.7 4e-13 seq25744 84.2 2e-11 >seq25706 Length=1095516 Score = 109 bits (120), Expect = 4e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCG-CTGAGAATTCTCGCGTCTTCTAATTG 15032 || ||||| || |||||||| ||||| |||||| || || | | ||||||| | || Sbjct 699631 TGGAGGGTTGATTCTTTTTGAATGTTATAATCGGCTAAGG-TGCGGCCGTCTTCGAGCTG 699689 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| || ||| | || | ||| || ||||| ||| |||||||||||||| ||||| Sbjct 699690 TTTTCCTGCGAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTT 699749 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||| || | ||||| || ||||| | || || || | || ||||| || ||||| Sbjct 699750 GGCTTTCACGTTGTCTATTGTGTCGCTGCTCTCCACCTCCAGAGTGATGGTCTTTCCTGT 699809 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || ||||| ||||| Sbjct 699810 GAGGGTTTTCACGAAAATCTGCAT 699833 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||| |||| | || || | ||||| ||||| ||||| || || || ||||| || Sbjct 698923 CCACCGCGCAGACGCAAGACAAGGTGAAGAGTAGACTCTTTCTGGATATTATAATCAGCC 698982 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | || | ||||| | ||| || ||||| | ||||| | ||| || || || Sbjct 698983 AAGG-TCCTTCCATCTTCAAGTTGCTTCCCAGCAAAAATCAATCTCTGCTGATCAGGAGG 699041 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||| |||||||| || ||| || || ||| | || |||||||||||| | || || Sbjct 699042 AATCCCTTCCTTATCCTGAATCTTAGCCTTAACATTATCAATAGTATCGCTACTCTCCAC 699101 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || || || |||| ||| || |||||||| ||||| Sbjct 699102 CTCCAAAGTAATAGTCTTTCCAGTCAAAGTCTTAACAAAAATCTGCAT 699149 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 14962 CTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCG 15021 ||||| || | ||||| || || || || || ||||| ||||| | | | || | Sbjct 699163 CTTAACACAAGGTGAAGTGTTGATTCCTTCTGAATGTTATAATCAGCCAAAGTCCTTCCA 699222 Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||| | || || || ||| | ||||| | ||| || || |||||| ||||| ||| Sbjct 699223 TCTTCAAGCTGCTTTCCTGCGAAAATCAACCTCTGCTGATCTGGTGGAATCCCTTCTTTG 699282 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || ||| || || ||| | || || || || || ||||||| || ||||||||| Sbjct 699283 TCTTGAATCTTCGCCTTGACATTATCGATTGTGTCACTGCTTTCTACCTCCAAGGTAATG 699342 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || |||| || || ||||||||||||||| Sbjct 699343 GTCTTTCCCGTCAAGGTCTTAACAAAAATTTGCATA 699378 >seq25310 Length=177726 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||| || | ||||| | |||||||||||| || || ||||| || || || ||||| Sbjct 154708 TGCCTCCCCTCAATCGGAGAACTAAATGAAGAGTTGATTCTTTCTGAATATTATAATCTG 154767 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | || | ||||| | |||||| || ||| | |||| ||||||||| || | Sbjct 154768 CAAGCGTCCTGCCATCTTCGAGTTGTTTTCCGGCGAAGATCAGACGCTGTTGATCAGGAG 154827 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || |||||||| || || ||| |||||| | || || || ||| | || | Sbjct 154828 GGATGCCTTCCTTATCTTGGATCTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCGA 154887 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | || ||||| || || || || ||||| ||||| ||||||||| Sbjct 154888 CCTCAAGAGTTATGGTCTTGCCGGTGAGGGTTTTGACAAAGATTTGCATA 154937 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||||| ||||| ||||| || || || ||||| |||||| | | | | ||||||| Sbjct 154955 AACTAGGTGAAGAGTAGACTCCTTCTGGATGTTATAATCGGCCAAAGTACGGCCGTCTTC 155014 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| || || ||| | ||||| | |||||||| |||||||||||| || | Sbjct 155015 GAGTTGCTTTCCGGCGAAGATCAACCTTTGTTGGTCAGGTGGAATTCCTTCTTTACCTTG 155074 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| || ||| | || || ||||| | | || || || | ||||| ||||| Sbjct 155075 GATCTTGGCCTTGACATTATCGATGGTATCAGAACTCTCCACCTCGAGAGTAATAGTTTT 155134 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAAA 15188 ||| || | ||||| || || || ||||||||||||| ||| Sbjct 155135 ACCGGTTAAGGTTTTGACGAAGATCTGCATATTTGAAAGAAA 155176 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| | | ||||| ||||||||| || || || || ||||| ||||| Sbjct 166307 CCTCCTCTCAACCGAAGAACTAGATGAAGGGTCGACTCCTTCTGAATGTTATAATCTGCA 166366 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | || | ||||| | |||||| || ||| | |||| ||||||||| || || Sbjct 166367 AGGGTCCTGCCATCTTCGAGTTGTTTTCCGGCGAAGATCAGACGCTGTTGATCAGGAGGG 166426 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| |||||| | || || || ||| | || || Sbjct 166427 ATGCCTTCCTTGTCTTGGATCTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCGACC 166486 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || ||||| || || || || || || ||||| ||||||||| Sbjct 166487 TCAAGAGTTATGGTCTTGCCGGTGAGGGTCTTGACAAAGATTTGCATA 166534 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || ||||| || || || |||||| ||| | | | || ||||| || Sbjct 154277 ATGGAGGGTGGACTCTTTCTGAATATTATAATCGGCCAGAGTACGTCCATCCTCTAACTG 154336 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || || |||||| | ||| || || |||||| || ||||| || || || Sbjct 154337 CTTCCCTGCAAATATCAGCCTCTGCTGATCAGGTGGAATCCCCTCCTTATCTTGGATCTT 154396 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || || ||||| |||| || |||| || ||||| || || || Sbjct 154397 GGCCTTCACATTATCAATCGTATCAGAGCTTTCGACCTCTAGAGTTATGGTCTTGCCGGT 154456 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 |||||||||||||| || ||||| Sbjct 154457 GAGAGTTTTTACAAAGATCTGCAT 154480 >seq25573 Length=429841 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || ||||| |||||||| ||| ||| | | |||| || | || Sbjct 359425 TGGAGGGTTGATTCCTTTTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCAAGCTGC 359484 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | || ||||| |||||||| || || ||||||||||| |||||| Sbjct 359485 TTTCCGGCGAAGATTAAACGTTGTTGGTCCGGGGGTATACCTTCCTTGTCTTGGATTTTG 359544 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || || || ||||| |||| ||| || ||||| || || Sbjct 359545 GCCTTCACATTGTCGATTGTGTCTGATGACTCTACCTCTAGGGTTATTGTTTTCCCCGTT 359604 Query 15154 AGAGTTTTTACAAAAATTTGCATATTT 15180 || ||||| ||||| || ||||||||| Sbjct 359605 AGGGTTTTCACAAAGATCTGCATATTT 359631 >seq25319 Length=181645 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || || || |||||||| ||| ||| | | | || || Sbjct 59245 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTACGGCCATCCTCC 59186 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||||||||| | || | | ||| ||||| ||||| ||||||||||| | Sbjct 59185 AGCTGTTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGA 59126 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || ||| | || ||||| || | || || || |||||||| || || Sbjct 59125 ATCTTGGCCTTAACATTGTCAATAGTGTCCGAGCTCTCAACTTCCAAGGTAATAGTCTTG 59066 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || ||||||||||||||| Sbjct 59065 CCAGTGAGGGTCTTCACAAAAATTTGCATA 59036 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || || || |||||||| || ||| | | | || || Sbjct 59017 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCGAGGGTACGGCCATCCTCC 58958 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||||||||| | || | | ||| ||||| || ||||| |||||||| Sbjct 58957 AGCTGTTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGT 58898 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| ||| ||| | || || || || | || || ||||||||||| || || Sbjct 58897 ATCTTGGCTTTAACATTGTCAATTGTGTCTGAGCTCTCAACCTCTAAGGTAATAGTCTTG 58838 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || |||||||| |||||| Sbjct 58837 CCAGTGAGAGTCTTCACAAAAATCTGCATA 58808 >seq25716 Length=1210045 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || |||||||||||||| |||||||| || || || || || | | | || ||| Sbjct 962539 ACCAAATGAAGGGTAGACTCTTTTTGAATATTATAGTCAGCAAGTGTACGACCATCCTCT 962480 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||||||| |||||| | ||| || || |||||| ||||| ||||| | Sbjct 962479 AGCTGCTTGCCAGCGAATATCAGCCTCTGCTGATCAGGTGGAATACCTTCTTTGTCCTGA 962420 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || ||| | || || || || | | || || || | ||||| || || Sbjct 962419 ATCTTAGCCTTGACATTGTCAATGGTGTCTGAACTCTCAACCTCCAGTGTAATTGTCTTG 962360 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| ||||| |||||||| Sbjct 962359 CCAGTGAGGGTTTTCACAAAGATTTGCAT 962331 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || |||||||| || || || || |||||||| || | ||| | || || | || Sbjct 963217 TGCAGGGTAGATTCCTTCTGGATATTGTAATCAGCAAGGGTCCTCCCATCCTCAAGCTGC 963158 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | ||||| | ||| || || ||| || ||||||||||| |||||| Sbjct 963157 TTCCCAGCAAAAATCAACCTCTGCTGATCTGGTGGGATGCCTTCCTTGTCTTGAATTTTT 963098 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || | |||||| | | || || || ||||| || || || ||||| Sbjct 963097 GCCTTCACATTGTCAACAGTATCTGAACTCTCCACCTCCAAGGTTATAGTCTTCCCTGTA 963038 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || ||||| Sbjct 963037 AGGGTCTTCACAAAGATCTGCAT 963015 >seq25744 Length=1702523 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||||| | || | ||| | ||||| || || || |||||||| || Sbjct 948294 CCTCCTCTCAATCGCAGCACCAGATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCGCA 948235 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | ||||||| | ||| || || ||| | || | || || ||||| ||| Sbjct 948234 AGTGTACGGCCGTCTTCGAGTTGCTTTCCTGCGAAGATTAGCCGTTGCTGGTCCGGTGGG 948175 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || ||| | || || |||||| ||| || Sbjct 948174 ATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTGTCGATGGTATCGGAGGATTCAACC 948115 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 |||| ||| ||||| ||||| || || ||||| || || || ||||| ||| Sbjct 948114 TCTAGGGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 948064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357279783714455