Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq25310 116 3e-21 seq25319 104 2e-17 seq25706 100 3e-16 seq25573 95.1 1e-14 seq25634 93.3 4e-14 seq25337 86.0 6e-12 >seq25310 Length=177726 Score = 116 bits (128), Expect = 3e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| ||| || |||||||| || || ||||||||||| | || | ||| || Sbjct 154728 ACTAAATGAAGAGTTGATTCTTTCTGAATATTATAATCTGCAAGCGTCCTGCCATCTTCG 154787 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||||||| ||| | |||| || || || || || || |||||||| |||||||| Sbjct 154788 AGTTGTTTTCCGGCGAAGATCAGACGCTGTTGATCAGGAGGGATGCCTTCCTTATCTTGG 154847 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || ||| | || | || | |||||||| |||||| || ||||| | || || Sbjct 154848 ATCTTGGCTTTTA-CGTTATCAATTGTGTCGGAGCTCTCGACCTCAAGAGTTATGGTCTT 154906 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 |||||| || ||||| ||||| |||||||| ||| || Sbjct 154907 GCCGGTGAGGGTTTTGACAAAGATTTGCATACCGCCAC 154944 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| ||||| | ||| ||||| || || || ||||| ||||| ||||||||| Sbjct 166076 ATCCCACCGCGCAGCCTGAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTATAATCG 166135 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| || || || || || || | || | | ||||| || || Sbjct 166136 GCGAGGGTCCTTCCATCCTCTAACTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCAGGT 166195 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| ||||||||||| || ||| | || | || | || || || || Sbjct 166196 GGGATCCCTTCCTTATCTTGAATCTTCGCTTTCA-CGTTATCAATCGTATCCGAGCTTTC 166254 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || || | || |||||||| || || || ||||| || |||||| Sbjct 166255 AACTTCAAGGGTTATGGTCTTGCCGGTAAGGGTCTTCACAAAGATCTGCATC 166306 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || || || || || |||||||||||||| ||||||||| Sbjct 166532 ATACCGCCACGGAGACGGAGGACCAGGTGAAGAGTAGATTCCTTTTGGATGTTATAATCG 166591 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || || | || ||||| ||| | ||||| | ||| ||||| || Sbjct 166592 GCCAAAGTACGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAACCTTTGTTGGTCAGGT 166651 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| ||||| || || || | || | ||| || || ||| Sbjct 166652 GGGATCCCTTCTTTGTCTTGGATCTTGGCCTTCACATTATCGATGGTATCAGAGCTCTCC 166711 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| ||||| ||||||| |||||| ||||| || ||||| Sbjct 166712 ACCTCCAGAGTAATTGTTTTCCCGGTTAAAGTTTTGACAAAGATCTGCAT 166761 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | ||| ||||| || || || || || || |||||||||||| Sbjct 154254 CCACCGCGAAGACGGAGCACAAGATGGAGGGTGGACTCTTTCTGAATATTATAATCGGCC 154313 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| || || || || ||||| |||||| | ||||| || || ||| Sbjct 154314 AGAGTACGTCCATCCTCTAACTGCTTCCCTGCAAATATCAGCCTCTGCTGATCAGGTGGA 154373 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || |||||||| || || || | || | || || || ||||| Sbjct 154374 ATCCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATCGTATCAGAGCTTTCGACC 154433 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| | || |||||||| |||||||||||||| || ||||| Sbjct 154434 TCTAGAGTTATGGTCTTGCCGGTGAGAGTTTTTACAAAGATCTGCAT 154480 >seq25319 Length=181645 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | |||||| | ||| || ||||||||||| ||||| ||||| || Sbjct 59722 ATCCCACCACGGAGACGCAACACCAAATGAAGGGTTGATTCCTTCTGGATGTTATAGTCA 59663 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | || |||||||| | ||||| | |||||| ||||| Sbjct 59662 GCCAAAGTCCTTCCATCTTCAAGCTGCTTTCCTGCAAAAATCAACCTTTGCTGATCCGGT 59603 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || ||||| || |||||||| || | || | |||||| || ||| Sbjct 59602 GGAATCCCCTCTTTGTCCTGAATTTTAGCCTTCACATTATCAATGGTGTCAGAGCTCTCA 59543 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | |||| ||||| || || ||||| || ||||| || ||||| Sbjct 59542 ACCTCCAAGGTAATGGTTTTCCCAGTAAGAGTCTTAACAAATATCTGCAT 59493 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 ||| || ||||| | || || || |||| || || ||||| ||||| || ||||| Sbjct 59948 TCCACCACGGAGACGCAGGACAAGGTGCAATGTAGACTCCTTCTGGATGTTGTAATCTGC 59889 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | |||| ||| |||||||| || || || | |||| | |||||||||||| || Sbjct 59888 CAGGGTTCGGCCATCCTCCAATTGCTTCCCAGCAAAGATCAGCCTTTGCTGGTCCGGTGG 59829 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 ||| ||||| || || || ||||| || | || | ||| || || ||| || Sbjct 59828 AATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATTGTCAATGGTATCTGAGCTCTCAAC 59769 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| ||||| | ||||| || || ||||| || ||||| ||||||||| Sbjct 59768 TTCAAGAGTGATAGTTTTCCCAGTCAGAGTCTTGACAAATATTTGCATC 59720 >seq25706 Length=1095516 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | | || || || || |||||||| ||||| || ||||||||| Sbjct 699604 ATGCCACCGCGGAGACGGAGGACAAGGTGGAGGGTTGATTCTTTTTGAATGTTATAATCG 699663 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | |||||||||||| | || | ||||||||||| || Sbjct 699664 GCTAAGGTGCGGCCGTCTTCGAGCTGTTTTCCTGCGAAGATGAGACGTTGCTGGTCTGGT 699723 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| || ||||| ||||| ||| | || | |||| |||||| ||| Sbjct 699724 GGGATTCCTTCCTTGTCTTGGATTTTGGCTTTCA-CGTTGTCTATTGTGTCGCTGCTCTC 699782 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || ||||| | || || || || || ||||| || ||||| |||||| Sbjct 699783 CACCTCCAGAGTGATGGTCTTTCCTGTGAGGGTTTTCACGAAAATCTGCATC 699834 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || ||||| ||||| || || || ||||||||||| || || |||||||| Sbjct 699148 ATCCCTCCACGAAGCCTTAACACAAGGTGAAGTGTTGATTCCTTCTGAATGTTATAATCA 699207 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | || ||||||||| | ||||| | ||||| || || Sbjct 699208 GCCAAAGTCCTTCCATCTTCAAGCTGCTTTCCTGCGAAAATCAACCTCTGCTGATCTGGT 699267 Query 45231 GGAATGCCTTCTTTATCTTGAATTTT 45256 ||||| |||||||| |||||||| || Sbjct 699268 GGAATCCCTTCTTTGTCTTGAATCTT 699293 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | ||| || || || |||||||| || |||||||||||||| Sbjct 699376 ATACCTCCACGGAGACGAAGCACAAGGTGAAGTGTTGATTCTTTCTGGATATTATAATCA 699435 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | |||||||| || | || | | |||||| || || Sbjct 699436 GCCAAAGTACGCCCATCTTCAAGCTGTTTTCCAGCAAAGATTAGCCTTTGCTGATCTGGG 699495 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||| || ||||| ||| |||| || | |||||| ||| Sbjct 699496 GGAATTCCTTCTTTGTCCTGAATCTTTGCCTTGACATTATCAATAGTGTCGCTGCTCTCA 699555 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||||| || || || || | ||||| || || || ||||| Sbjct 699556 ACTTCAAGAGTAATGGTCTTTCCCGTCAAGGTTTTGACGAAGATCTGCAT 699605 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | ||| || || || || || || || || |||||||||||||| Sbjct 698923 CCACCGCGCAGACGCAAGACAAGGTGAAGAGTAGACTCTTTCTGGATATTATAATCAGCC 698982 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| || | ||| || || || | ||||||| ||||| || || ||| Sbjct 698983 AAGGTCCTTCCATCTTCAAGTTGCTTCCCAGCAAAAATCAATCTCTGCTGATCAGGAGGA 699042 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| ||||| ||||| || || | || | || ||| | ||| || Sbjct 699043 ATCCCTTCCTTATCCTGAATCTTAGCCTTAACATTATCAATAGTATCGCTACTCTCCACC 699102 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || | ||||| || || || || | ||| || |||||||| |||||| Sbjct 699103 TCCAAAGTAATAGTCTTTCCAGTCAAAGTCTTAACAAAAATCTGCATC 699150 >seq25573 Length=429841 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || ||||||||||||||||| || || ||| || || || || Sbjct 359418 CACAAGGTGGAGGGTTGATTCCTTTTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTC 359477 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | || ||||| ||| | || || ||||| |||||||| || || ||||| || ||||| Sbjct 359478 AAGCTGCTTTCCGGCGAAGATTAAACGTTGTTGGTCCGGGGGTATACCTTCCTTGTCTTG 359537 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| || | || | ||||| || ||||| || || || || | ||||| Sbjct 359538 GATTTTGGCCTTCACATTGTCGATTGTGTCTGATGACTCTACCTCTAGGGTTATTGTTTT 359597 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| ||||| ||||| || ||||| Sbjct 359598 CCCCGTTAGGGTTTTCACAAAGATCTGCAT 359627 >seq25634 Length=602113 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||||||||||||||| |||||||| | ||| ||| || | || Sbjct 348524 TGGAGAGTTGATTCCTTTTGGATGTTATAATCAGCAAGGGTGCGTCCATCCTCAAGCTGC 348465 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | |||| || |||||||||||| ||||| || || || |||||||| || Sbjct 348464 TTGCCAGCAAAAATCAGTCTTTGCTGGTCCGGGGGAATACCCTCCTTGTCTTGAATCTTA 348405 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | || | ||||| || || || || || || | || ||||| ||| Sbjct 348404 GCTTTTACATTGTCAATAGTGTCTGAGCTTTCTACCTCAAGGGTGATAGTCTTGCCAGTT 348345 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || |||||||||||| Sbjct 348344 AGGGTTTTCACGAAAATTTGCATC 348321 >seq25337 Length=191068 Score = 86.0 bits (94), Expect = 6e-12 Identities = 135/192 (70%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 45151 CCTTT-TGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTAT 45209 ||||| |||||||| ||||| | ||| || ||| || | ||| ||||| ||| | Sbjct 89121 CCTTTCTGGATATTGTAATCAGCCAAAGTTCTACCATCTTCAAGTTGCTTTCCAGCGAAG 89062 Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 ||||| || |||||||| || |||||||||||||| || || || || |||| Sbjct 89061 ATCAAGCGCTGCTGGTCAGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTG 89002 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | ||| || ||| || |||||||| | || || || ||||| ||||| || Sbjct 89001 TCGATGGTATCACTGCTCTCTACCTCGAGAGTTATTGTCTTCCCAGTTAGGGTTTTCACG 88942 Query 45330 AAAATTTGCATC 45341 || || |||||| Sbjct 88941 AATATCTGCATC 88930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451857638019480