Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq25679 95.1 1e-14 seq25762 89.7 6e-13 seq25760 89.7 6e-13 >seq25679 Length=787315 Score = 95.1 bits (104), Expect = 1e-14 Identities = 246/370 (66%), Gaps = 14/370 (4%) Strand=Plus/Plus Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764 ||||| || ||||| | | | ||| ||| || ||||| | || || || || Sbjct 166660 TCAAACCGCCCTGGCCTCAACAAGGCAGAGTCCAGAATATCTGCTCTATTAGTTGCTGCA 166719 Query 12765 ATGACAACGATGCCCGTCTCGTTA---TCGAAGCCATCCATCTCAGTCAAGAGTTGATTG 12821 || |||| ||| || || |||| || || |||||||| || ||||| || || || Sbjct 166720 ATAACAATGATACCAGT---GTTACCCTCAAAACCATCCATTTCTGTCAATAGCTGGTTA 166776 Query 12822 ATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA---CCCGCACTGCGTTGCTTACCG 12878 | || ||||| | ||||||||| | | |||| || | | | |||| | || Sbjct 166777 AGTGTCTGTTCTCTTTCATCATTTCC---CCCACCAATGCCGGTGCCTCTTTGCCTTCCA 166833 Query 12879 ACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAG 12938 || || |||||||| || | || || ||||| ||| |||||| ||| || ||| Sbjct 166834 ACAGCATCAATTTCATCCACAAATACAATACAAGGTGCATTTTCTTTGGCCTTTTTGAAG 166893 Query 12939 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAA 12998 | ||| || ||||| |||||| ||||| ||||||||||| ||||| | | | | | Sbjct 166894 AGATCACGGACTCTAGAGGCACCAACACCAACAAACATCTCAACAAACTCAGAACCTG-A 166952 Query 12999 CATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 13057 || | || || || ||| | |||||| || || || || || || |||||||| Sbjct 166953 TATGGAGAAAAATGGAACGCCAGCTTCACCAGCAATTGCCTTAGCTAGAAGAGTCTTCCC 167012 Query 13058 CGTCCCTGGT 13067 || |||||| Sbjct 167013 AGTTCCTGGT 167022 >seq25762 Length=4693355 Score = 89.7 bits (98), Expect = 6e-13 Identities = 188/279 (67%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 ||||||||||| |||||||| | || || ||||| ||||| | ||||||||| | Sbjct 4006679 AAGCCATCCATTTCAGTCAACAACTGGTTAATGGTCTGTTCTCTTTCATCATTTCCACC- 4006621 Query 12852 ATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 |||| || || | | ||| | || || || |||||||| ||||| || || || Sbjct 4006620 --ACCAAGGCCTGCTCCTCTCTGCCTTCCAACAGCATCAATTTCATCAATAAACACAATG 4006563 Query 12909 CACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 || || ||| | ||| || || | ||||| ||||||| || || |||||| Sbjct 4006562 CAAGGAGCCTTTGCTTTGGCTTTATCGAACAAATCTCTCACTCTCGAAGCCCCAACACCC 4006503 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028 ||||||| ||| ||||| | | || | |||| || || ||||| | ||| || Sbjct 4006502 ACAAACAACTCAACAAACTCAGATGCTGCACATGAGAAAAATGGGACTCCTGCTTCTCCA 4006443 Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 13067 || | |||| || | || |||||||| || || ||| Sbjct 4006442 GCAACTGCTCTAGCTAACAGTGTCTTCCCTGTACCAGGT 4006404 >seq25760 Length=3792821 Score = 89.7 bits (98), Expect = 6e-13 Identities = 176/256 (69%), Gaps = 7/256 (3%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 ||||| || || ||||| | || || || || |||||| ||||| | || ||||| Sbjct 707930 CCCTCATCTCGTGAGATTAACTCGTTTGAAAATGTCAGACCCGGCATTAACCCACGCTTT 707989 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | ||| || ||||| || || ||||||||||| ||||| || ||||| ||||| Sbjct 707990 TTAAGCCAAAATATCGCGCAGAAACTTCCAGAGAAGAAAATCCCTTCAACACAAGCGAAA 708049 Query 127658 GCAAATAGACGCTCGGCAAAGGA-GCGGGACTTTGTATCAAACCACTTCATCGCCCACTG 127716 |||| | | ||| ||||| || | | | | ||| ||| |||| ||||||| Sbjct 708050 GCAATAATCCTCTCAGCAAAAGATTCCGAGCCGTCTAT----CCATTTCAAAGCCCACTC 708105 Query 127717 TGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGA 127776 || || ||| | || || || || |||| ||| || | ||| | |||||||| Sbjct 708106 CGCTTTCTTCGCTATGCAAGGAACCGTCTCGATAGCGTGAAACAAACGGTTCTTTTC-AT 708164 Query 127777 TGGA-TCTTTGATGTA 127791 |||| |||||||| || Sbjct 708165 TGGAGTCTTTGATATA 708180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613309627675080