Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq25744 127 2e-24 seq25716 104 3e-17 seq25310 104 3e-17 seq25573 98.7 1e-15 seq25319 95.1 1e-14 >seq25744 Length=1702523 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| || |||| |||||||||||| ||| |||||| ||||| |||||||| | Sbjct 948294 CCTCCTCTCAATCGCAGCACCAGATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCGCA 948235 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || |||| ||||| ||||| || ||||| || | || |||||||| | || Sbjct 948234 AGTGTACGGCCGTCTTCGAGTTGCTTTCCTGCGAAGATTAGCCGTTGCTGGTCCGGTGGG 948175 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||| |||||| ||| | | | | || ||| ||||| || Sbjct 948174 ATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTGTCGATGGTATCGGAGGATTCAACC 948115 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || | || ||||| || ||||| || ||||| || ||||| ||||| || Sbjct 948114 TCTAGGGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 948065 >seq25716 Length=1210045 Score = 104 bits (114), Expect = 3e-17 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||| | ||||||||| | || |||||||| ||||||||||| | Sbjct 963015 TGCCACCACGGAGACGGAGCACCAGATGAAGGGTTGATTCCTTTTGAATATTGTAGTCCG 962956 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || |||||| | || || |||||||| || || || |||| | ||||||||| | | Sbjct 962955 CAAGGGTGCGCCCATCCTCTAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGTG 962896 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATT 46541 | | | || |||||| |||||| ||||| | | | ||||| |||| | Sbjct 962895 GGATACCTTCTTTGTCCTGGATCTTAGCCTTGACATTGTCAATAGTGTCAGAGCTC---T 962839 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || |||| ||||| || || || || || ||||| |||||||||||||| Sbjct 962838 CAACCTCCAGGGTGATTGTCTTACCAGTGAGAGTTTTCACAAAGATTTGCAT 962787 Score = 96.9 bits (106), Expect = 4e-15 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| ||||| || ||||| |||||||||||||| | || ||||| | || || Sbjct 962768 CACCAAGTGCAAAGTGGATTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTC 962709 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||| || || || |||| | ||||||||| | || | | ||||||||| Sbjct 962708 CAGCTGCTTACCCGCAAAGATCAGCCTCTGCTGGTCTGGTGGTATCCCTTCCTTGTCCTG 962649 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560 ||||| ||||| | | | || || |||| || || |||| ||||| || Sbjct 962648 AATCTTGGCCTTGACATTGTCTATGGTATCCGAGCTC---TCAACCTCCAGGGTGATTGT 962592 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || || ||||| |||||||||||||| Sbjct 962591 CTTGCCAGTGAGGGTTTTTACAAAGATTTGCAT 962559 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| ||| | ||| ||| ||||| ||||| ||||| | || || || | || || Sbjct 962540 CACCAAATGAAGGGTAGACTCTTTTTGAATATTATAGTCAGCAAGTGTACGACCATCCTC 962481 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| |||||||||| | |||||| || | || | | || |||||| Sbjct 962480 TAGCTGCTTGCCAGCGAATATCAGCCTCTGCTGATCAGGTGGAATACCTTCTTTGTCCTG 962421 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560 ||||| ||||| | | | ||||| ||| || || |||| || || || Sbjct 962420 AATCTTAGCCTTGACATTGTCAATGGTGTCTGAACTC---TCAACCTCCAGTGTAATTGT 962364 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || || ||||| |||||||||||||| Sbjct 962363 CTTGCCAGTGAGGGTTTTCACAAAGATTTGCAT 962331 >seq25310 Length=177726 Score = 104 bits (114), Expect = 3e-17 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| || || | |||||||| | || ||| |||||||| || || || | Sbjct 154480 TGCCCCCTCTCAATCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTATAATCAG 154539 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || | | || ||||||||||| |||||||| || | | |||||| || | || Sbjct 154540 CAAGCGTCCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATTAGCCTCTGCTGATCAGGCG 154599 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATT 46541 | | | ||||| || |||||| ||||| | | | |||||| |||| | Sbjct 154600 GGATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTATCGATCGTGTCAGAGCTC---T 154656 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || | || ||||| ||||||||||| || || |||||||||||||| Sbjct 154657 CCACCTCGAGAGTTATGGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 154708 Score = 82.4 bits (90), Expect = 9e-11 Identities = 148/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| ||||||||||| || || |||| | ||| || |||| ||| Sbjct 166553 ACCAGGTGAAGAGTAGATTCCTTTTGGATGTTATAATCGGCCAAAGTACGGCCGTCTTCG 166612 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| |||||||| ||||| | || ||||| | || | | || ||||| | Sbjct 166613 AGCTGCTTTCCGGCGAAGATCAACCTTTGTTGGTCAGGTGGGATCCCTTCTTTGTCTTGG 166672 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTT 46561 ||||| ||| | | | | || || |||| ||||| |||| || || ||| Sbjct 166673 ATCTTGGCCTTCACATTATCGATGGTATCAGAGCTC---TCCACCTCCAGAGTAATTGTT 166729 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || || | ||||| |||||||| ||||| || Sbjct 166730 TTCCCGGTTAAAGTTTTGACAAAGATCTGCATATT 166764 >seq25573 Length=429841 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||||| || ||||| |||| || |||||||| |||||||| Sbjct 359437 TCCTTTTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAG 359496 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || || || || ||||| | || | | |||||||| ||| || ||| | | Sbjct 359497 ATTAAACGTTGTTGGTCCGGGGGTATACCTTCCTTGTCTTGGATTTTGGCCTTCACATTG 359556 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || || || || | || || ||||| ||||| || ||||| ||| Sbjct 359557 TCGATTGTGTCTGATGACTCTACCTCTAGGGTTATTGTTTTCCCCGTTAGGGTTTTCACA 359616 Query 46583 AAGATTTGCATTTT 46596 ||||| ||||| || Sbjct 359617 AAGATCTGCATATT 359630 >seq25319 Length=181645 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || || ||||| | |||||||| | || |||||||| || || || || Sbjct 58772 CTCCTTTTGAATGTTATAGTCAGCAAGAGTGCGACCATCTTCGAGCTGTTTTCCAGCAAA 58713 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | || || || | || | | ||||||||| |||||| | ||| | | Sbjct 58712 GATCAACCTTTGTTGATCTGGAGGGATCCCCTCCTTGTCTTGGATCTT-TGCTTTCACAT 58654 Query 46522 CGCC-ACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| ||| |||||| || | |||||||| ||||| || || |||| Sbjct 58653 TGTCGATGGTGTCTGAGCT---TTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTT 58597 Query 46578 TAACAAAGATTTGCAT 46593 |||||||||||||||| Sbjct 58596 TAACAAAGATTTGCAT 58581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565056372038760