Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq25634 102 6e-17 seq25706 98.7 7e-16 seq25573 82.4 5e-11 >seq25634 Length=602113 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| || | || || ||||| || | || |||||||| ||||||||||| || Sbjct 348776 CCGCCACGAAGTCGGAGCACCAAGTGGAGTGTAGACTCTTTTTGAATATTATAATCAGCA 348717 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | |||| |||| || | |||||||| |||| || || | ||||||||| | ||| Sbjct 348716 AGAGTGCGTCCATCCTCGAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGATCTGGGGGA 348657 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | || || ||||| ||||| ||||| | ||| || ||||||| || || | Sbjct 348656 ATACCCTCCTTGTCTTGAATTTTGGCTTTAACATTGTCAATA--GTGTCTGAACTCTCAA 348599 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||| || || || || || || | || ||||| ||||||||||| Sbjct 348598 CTTCCAAGGTGATAGTCTTGCCAGTAAGGGTCTTTACAAAGATCTGCAT 348550 >seq25706 Length=1095516 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/196 (72%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 |||||| || ||||||||||| |||||| || |||| || | ||||| || |||| Sbjct 699414 TTCTTTCTGGATATTATAATCAGCCAAAGTACGCCCATCTTCAAGCTGTTTTCCAGCAAA 699473 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTG--TTTA-AT 39644 |||| | |||||||| | ||| | ||||||||||| | | | |||| || | || Sbjct 699474 GATTAGCCTTTGCTGATCTGGGGGAATTCCTTCTTTGTC-CTGAATCTTTGCCTTGACAT 699532 Query 39645 CGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTT 39704 || || ||||| ||| || || || | |||||| || || ||||| || ||||| Sbjct 699533 TATCAATA--GTGTCGCTGCTCTCAACTTCAAGAGTAATGGTCTTTCCCGTCAAGGTTTT 699590 Query 39705 TACGAAGATCTGCATG 39720 ||||||||||||||| Sbjct 699591 GACGAAGATCTGCATG 699606 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||||||||| || ||||||||||| || ||| | || || | ||||| || | || Sbjct 699642 TTCTTTTTGAATGTTATAATCGGCTAAGGTGCGGCCGTCTTCGAGCTGTTTTCCTGCGAA 699701 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 || | ||| ||||| || | || | ||||| ||||| ||||| ||| | ||| Sbjct 699702 GATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTGGCTTTCA-CGT 699760 Query 39648 CG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 | ||| |||||| ||| ||||| |||| ||| || || || || || | ||||| | Sbjct 699761 TGTCTATTGTGTCGCTGCTCTCCACCTCCAGAGTGATGGTCTTTCCTGTGAGGGTTTTCA 699820 Query 39707 CGAAGATCTGCAT 39719 |||| |||||||| Sbjct 699821 CGAAAATCTGCAT 699833 >seq25573 Length=429841 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 39491 CGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGG 39550 ||||||| ||||| || || || | || | || ||| ||||| || || || |||| Sbjct 359399 CGCCGCCACGCAAGCGGAGCACAAGGTGGAGGGTTGATTCCTTTTGGATGTTGTAGTCGG 359458 Query 39551 CCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 | | ||| | || || | || || ||| | || |||||||| || || |||| || Sbjct 359459 CGAGCGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATTAAACGTTGTTGGTCCGGGG 359518 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTC 39668 ||| ||||| ||||| ||||| || | | |||| | |||||||| || Sbjct 359519 GTATACCTTCCTTGTCTTGGATTTTGGCCTTCACATTGTCGAT--TGTGTCTGATGACTC 359576 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | || |||||||| ||||||| ||||| || ||||||||||| Sbjct 359577 TACCTCTAGGGTTATTGTTTTCCCCGTTAGGGTTTTCACAAAGATCTGCAT 359627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347260530613379