Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq25760 196 5e-45 seq25573 125 7e-24 seq25319 122 9e-23 seq25744 114 1e-20 seq25634 113 5e-20 seq25716 98.7 1e-15 seq25310 86.0 6e-12 >seq25760 Length=3792821 Score = 196 bits (216), Expect = 5e-45 Identities = 576/874 (66%), Gaps = 18/874 (2%) Strand=Plus/Plus Query 132603 TTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAG 132662 ||| ||||| || || || | ||||||||||||||||| || || | || ||| || Sbjct 707617 TTTCTGATACTCTCCAACTCTCTTCTCAAAAAAATTAGTCTTCCCTTGTAAACTAATCAG 707676 Query 132663 CGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAG 132722 | ||| |||| || || || | || || | |||| || || | | | Sbjct 707677 CTCCATCCAATCAAAAGGATTTGACACATTATACTCCTTGCCGCACCCAAGCGCACCCAA 707736 Query 132723 CAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAG 132782 || |||||| || || ||||| || || || ||| || | ||| | |||| || Sbjct 707737 CAACCTGTCTGCAACAAACTCAATATACTGACTCATTAACTCCCCATTCATCCCCACCA- 707795 Query 132783 ACGCACC-GGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGA 132841 |||| | || ||||| || | ||| ||||||| ||||| || || | Sbjct 707796 ACGCGCAAGGAAGCGCGTCACATACAAACTCCCTCTCGATGTTCACCGCATCTCGCACTA 707855 Query 132842 TTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAA 132901 || || | |||||| || | ||| || | || | || | ||||| || || | Sbjct 707856 TTCCCTTCACGCGCTCCTCACTCAATTTTTTCTTTAACAGACTGTAAATCAAACACGCGA 707915 Query 132902 AGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAA--GTCAAGCCGGG 132959 | ||||| || |||||||| || | || || | ||||| ||||| |||| || || Sbjct 707916 AATCGCAGTGTAAGCCCTCATCTCGTGAGATTAACTCGTT--TGAAAATGTCAGACCCGG 707973 Query 132960 CATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCC 133019 ||| | || || ||||| ||||||||||| ||| |||||| || || ||||| | || Sbjct 707974 CATTAACCCACGCTTTTTAAGCCAAAATATCGCGCAGAAACTTCCAGAGAAGAAAATCCC 708033 Query 133020 CTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCA 133079 || || |||||||| | | | ||| | || | ||| || | | ||||| Sbjct 708034 TTCAACACAAGCGAAAGCAATAATCCTCTCAGCAAAAGA---TTCCGAGCCGTCTATCCA 708090 Query 133080 GCGCAGCGCCCATTCGGCCTTTTCTTTG--ACGCACGGCATCGTTTCGATGGCGTTCAAC 133137 || ||||| || || |||||| | | ||| || | ||| ||||| |||| ||| Sbjct 708091 TTTCAAAGCCCACTCCGC--TTTCTTCGCTATGCAAGGAACCGTCTCGATAGCGTGAAAC 708148 Query 133138 AAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCC 133197 |||||| || || | ||| | || || || | | || |||||||| Sbjct 708149 AAACGGTTCTTTTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGAGAGTACATTTCA 708208 Query 133198 GAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTA-AAAGCACCGCGCCTCGACCACCTG 133256 ||||| | |||||| || |||||||| || ||||| ||||||| ||||||| |||| || Sbjct 708209 GAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAGAAAGCAC-GCGCCTCAGCCACTTG 708267 Query 133257 CACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAA 133316 || |||| ||||| || | || ||||| |||||| |||||| ||||||||| Sbjct 708268 AACCTCTTTCATAAAACGGCCGGCGAGGTTTTCAAGGACGATACCGTCGGAGGCGGCGAA 708327 Query 133317 AAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCG 133376 ||||| || ||||| |||||| || || | | | | | ||||||| || Sbjct 708328 GAAGGCGAGGACGTGAGAGATGAAGTGCTTTTCATCGGGAGTTAGGGATTCCCAGTGACG 708387 Query 133377 CGTGTCCTTG-GACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGT 133435 | | |||| || || ||||| ||||| | |||||||| || || ||||||||||||| Sbjct 708388 -GAGATCTTGAGAGAGATCCACTTCCTCTGCCGTCCAAAATGATGCTTCGGCTTTTTTGT 708446 Query 133436 ACATACTCCACATGTCCGAATATTGTA-TGGGAA 133468 |||| ||| || || | ||||| | |||||| Sbjct 708447 ACATTTCCCAAATTTCTGGGTATTGGATTGGGAA 708480 >seq25573 Length=429841 Score = 125 bits (138), Expect = 7e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 38238 aaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAG 38297 ||||| ||||| || || || ||||| || ||||| ||||| || ||| | || || ||| Sbjct 359633 AAAAATATGCAGATCTTTGTGAAAACCCTAACGGGGAAAACAATAACCCTAGAGGTAGAG 359574 Query 38298 GCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC 38357 | | |||| | | | | || | ||||||| ||||| || || || ||| | Sbjct 359573 TCATCAGACACAATCGACAATGTGAAGGCCAAAATCCAAGACAAGGAAGGTATACCCCCG 359514 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 |||||||| || | || | ||| || || ||||| || |||| ||||| ||| |||| Sbjct 359513 GACCAACAACGTTTAATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGCACGCTCGCCGAC 359454 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||||||||||| | || || || | ||||| || ||| | |||||| Sbjct 359453 TACAACATCCAAAAGGAATCAACCCTCCACCTTGTGCTCCGCTTGCGTGGCGGC 359400 >seq25319 Length=181645 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| || || ||| | || || ||| | | Sbjct 58809 ATGCAGATTTTTGTGAAGACTCTCACTGGCAAGACTATTACCTTAGAGGTTGAGAGCTCA 58868 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | |||||| || || | ||||| |||||||| ||| | ||||| Sbjct 58869 GACACAATTGACAATGTTAAAGCCAAGATACAGGACAAGGAGGGAATCCCCCCAGACCAG 58928 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || |||||||||||||| || | || |||||| ||||||||| Sbjct 58929 CAGAGGCTCATCTTTGCTGGCAAACAGCTGGAGGATGGCCGTACCCTCGCGGACTACAAC 58988 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| | || || || ||||| || ||| | ||||| || Sbjct 58989 ATTCAGAAGGAGTCCACCCTTCACTTGGTCCTCCGTCTTAGAGGTGG 59035 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| ||||| || || ||| | || || ||| | | Sbjct 59037 ATGCAAATTTTTGTGAAGACCCTCACTGGCAAGACTATTACCTTGGAAGTTGAGAGCTCG 59096 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | |||| | || || | ||||| || || |||||| | ||||| Sbjct 59097 GACACTATTGACAATGTTAAGGCCAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCAG 59156 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || |||||||||||||| || | || |||||| |||||||||| Sbjct 59157 CAGAGGCTCATCTTTGCTGGCAAACAGCTGGAGGATGGCCGTACCCTCGCCGACTACAAC 59216 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| | || || || ||||| || ||| | ||||| || Sbjct 59217 ATTCAGAAGGAGTCCACCCTTCACTTGGTCCTCCGTCTCAGAGGTGG 59263 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| ||||| || || ||| | || || ||| | | Sbjct 59265 ATGCAAATTTTTGTGAAGACCCTCACTGGCAAGACTATTACCTTGGAAGTTGAGAGCTCG 59324 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | |||| | || || | ||||| ||||| |||||| | |||||| Sbjct 59325 GACACAATTGACAATGTTAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCAGACCAA 59384 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || || ||||| || || | |||||||| ||||||||| Sbjct 59385 CAGAGGCTTATCTTTGCTGGGAAGCAGCTTGAAGATGGTCGCACCCTAGCTGACTACAAC 59444 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || ||||| | || || || |||||||| || Sbjct 59445 ATTCAGAAGGAGTCCACCCTTCACTTGGTGCTCCG 59479 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || || || || || || |||||||| ||| | || || ||| | | Sbjct 59493 ATGCAGATATTTGTTAAGACTCTTACTGGGAAAACCATTACCTTGGAGGTTGAGAGCTCT 59552 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||||| | ||||||||||| ||||| | || || Sbjct 59553 GACACCATTGATAATGTGAAGGCTAAAATTCAGGACAAAGAGGGGATTCCACCGGATCAG 59612 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| || || || ||||| || || | | || | ||||| ||| Sbjct 59613 CAAAGGTTGATTTTTGCAGGAAAGCAGCTTGAAGATGGAAGGACTTTGGCTGACTATAAC 59672 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||| | || || ||||||||| ||||| Sbjct 59673 ATCCAGAAGGAATCAACCCTTCATTTGGTGTTGCGT 59708 >seq25744 Length=1702523 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38240 aaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||||| ||||| || ||||| || ||||| ||| | || || || | Sbjct 948064 AAAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATAACCCTAGAGGTTGAATC 948123 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | | | | || | || |||| ||||| || || || || | || Sbjct 948124 CTCCGATACCATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCGGA 948183 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| || ||||| || | ||| || || || || || |||| || || || ||||| Sbjct 948184 CCAGCAACGGCTAATCTTCGCAGGAAAGCAACTCGAAGACGGCCGTACACTTGCGGACTA 948243 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| | || ||||| |||||||||| |||||||| || Sbjct 948244 CAACATCCAGAAGGAGTCTACTTTGCATCTGGTGCTGCGATTGAGAGGAGG 948294 >seq25634 Length=602113 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| || || ||||| || |||||| | || || || | | Sbjct 348322 ATGCAAATTTTCGTGAAAACCCTAACTGGCAAGACTATCACCCTTGAGGTAGAAAGCTCA 348381 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| || || | ||||| ||||| |||||| | ||||| Sbjct 348382 GACACTATTGACAATGTAAAAGCTAAGATTCAAGACAAGGAGGGTATTCCCCCGGACCAG 348441 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | || |||| || ||||| ||||| || || | |||||||| || || ||| Sbjct 348442 CAAAGACTGATTTTTGCTGGCAAGCAGCTTGAGGATGGACGCACCCTTGCTGATTATAAC 348501 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || || |||||||| || || || || || Sbjct 348502 ATCCAAAAGGAATCAACTCTCCACTTGGTGCTCCGATTAAGGGGTGG 348548 >seq25716 Length=1210045 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || |||||||| || || || |||||||| |||||| | || || || | | Sbjct 962103 ATGCAGATCTTCGTAAAGACACTAACTGGCAAAACTATCACCCTTGAGGTGGAAAGCTCT 962162 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | | | | || | || |||| || |||||||| || |||||| ||||| Sbjct 962163 GACACCATTGACAATGTCAAGGCTAAGATCCAAGATAAAGAGGGTAT-CCCGCCAGACCA 962221 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| |||| || | || || ||||||||||| || | ||||| || || ||||| Sbjct 962222 ACAGAGGCTGATCTTTGCTGGTAAACAGCTGGAGGATGGCCGCACACTTGCTGATTACAA 962281 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || ||||| | || || || ||||| || || Sbjct 962282 TATTCAGAAGGAGTCTACTCTTCACTTGGTTCTTCG 962317 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| ||||| ||||| || || || | || || ||| | Sbjct 962331 ATGCAAATCTTTGTGAAAACCCTCACTGGCAAGACAATTACACTGGAGGTTGAGAGTTCA 962390 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || || | |||||||| || ||||| | || || Sbjct 962391 GACACCATTGACAATGTCAAGGCTAAGATTCAGGACAAAGAAGGTATTCCACCTGATCAG 962450 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | ||| ||||| ||||| || || | || || || ||||| || Sbjct 962451 CAGAGGCTGATATTCGCTGGCAAGCAGCTAGAGGATGGTCGTACACTTGCTGACTATAAT 962510 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || ||||| || | || || ||||||||||| || Sbjct 962511 ATTCAAAAAGAGTCTACCCTTCATTTGGTGCTCCG 962545 >seq25310 Length=177726 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || |||||||| ||||| || |||| || ||| | | Sbjct 154708 ATGCAAATCTTTGTGAAGACTCTGACGGGCAAGACCATAACTCTCGAGGTGGAGAGCTCT 154649 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | | |||| | || | || |||| || || || || || |||||| || | Sbjct 154648 GACACGATCGATAACG-TCAAGGCCAAGATCCAAGATAAGGAAGGTAT-CCCGCCTGATC 154591 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| |||| || | ||| || || ||||| || || | | || || || || | Sbjct 154590 AGCAGAGGCTAATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGGACGCTTGCTGATTATA 154531 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| || | || || ||| |||| || || |||||||| ||| Sbjct 154530 ACATCCAAAAAGAGTCAACCCTTCATCTGGTTCTCCGATTGAGAGGGGGC 154481 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/238 (68%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 38234 CTTTaaaaaa-aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACG 38292 |||||||||| ||||| || || || ||||| | || || ||||| || || | || | Sbjct 166772 CTTTAAAAAATATGCAGATCTTTGTCAAAACTTTAACCGGGAAAACAATTACTCTGGAGG 166713 Query 38293 TCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTC 38352 | ||| | | || | | | | | | || | || |||| |||||||| || || | Sbjct 166712 TGGAGAGCTCTGATACCATCGATAATGTGAAGGCCAAGATCCAAGACAAAGAAGGGATCC 166653 Query 38353 CCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCA 38412 | | |||||||| || | || | ||| || || ||||| || |||| || || | Sbjct 166652 CACCTGACCAACAAAGGTTGATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGTACTTTGG 166593 Query 38413 ACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||||||||||||| | || || || |||| || ||| | | ||||| Sbjct 166592 CCGATTATAACATCCAAAAGGAATCTACTCTTCACCTGGTCCTCCGTCTCCGTGGCGG 166535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500011725601920