Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq25679 145 9e-30 seq25760 109 7e-19 seq25247 100 4e-16 >seq25679 Length=787315 Score = 145 bits (160), Expect = 9e-30 Identities = 289/423 (68%), Gaps = 14/423 (3%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TCA 15974 || || ||||| | | ||| ||||| || || |||| ||||| || |||| ||| Sbjct 166690 TCCAGAATATCTGCTCTATTAGTTGCTGCAATAACAATGATACCAGT---GTTACCCTCA 166746 Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 ||||||||||| |||||||| |||||||||| || ||||| | ||||||||| | | Sbjct 166747 AAACCATCCATTTCTGTCAATAGCTGGTTAAGTGTCTGTTCTCTTTCATCATT---TCCC 166803 Query 16035 ATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 |||| || | | | |||| |||| || |||||||| ||||| | || || || Sbjct 166804 CCACCAATGCCGGTGCCTCTTTGCCTTCCAACAGCATCAATTTCATCCACAAATACAATA 166863 Query 16092 CATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 || ||| |||||| || || |||||||| || || | ||| || |||||| Sbjct 166864 CAAGGTGCATTTTCTTTGGCCTTTTTGAAGAGATCACGGACTCTAGAGGCACCAACACCA 166923 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 ||||||||||| ||||| | | | | | || | || || || || || |||||| Sbjct 166924 ACAAACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACGCCAGCTTCACC 166982 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 ||||| || || ||||||||||| || || ||||| ||| | || || |||| Sbjct 166983 AGCAATTGCCTTAGCTAGAAGAGTCTTCCCAGTTCCTGGTGGACCAACCAGAAGAACACC 167042 Query 16271 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 16330 | ||||| || ||| | || | ||||||| || | ||| ||||| || || | Sbjct 167043 TTTGGGAATGCGAGCCCCAACTGCAGTGAATCTCTCTGGCTTCTTTAGAAACTCAACCAC 167102 Query 16331 CTC 16333 ||| Sbjct 167103 CTC 167105 >seq25760 Length=3792821 Score = 109 bits (120), Expect = 7e-19 Identities = 168/238 (71%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 102077 TGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGA 102136 ||| ||||| | | ||| | || ||| | || ||||| || || ||||||||||| Sbjct 708163 TGAAAAGAACCGTTTGTTTCACGCTATCGAGACGGTTCCTTGCATAGCGAAGAAAGCGGA 708104 Query 102137 TTGGGCTATGAAGTGGTTTGATACAAAG-TCGCGTTCCTTTGCTGAGCGACTCTTCGCAT 102195 |||||| |||| ||| ||| | | ||| || ||||||||| | | | || | Sbjct 708103 GTGGGCTTTGAAATGG----ATAGACGGCTCGGAATCTTTTGCTGAGAGGATTATTGCTT 708048 Query 102196 TTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGA 102255 | || |||||||| || || ||||||||||| |||||||| || | |||||| || | Sbjct 708047 TCGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGTTTCTGCGCGATATTTTGGCTTAAAA 707988 Query 102256 AGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||| || | ||||| ||||| || || |||||| | ||||| || || ||||| Sbjct 707987 AGCGTGGGTTAATGCCGGGTCTGACATTTTCAAACGAGTTAATCTCACGAGATGAGGG 707930 >seq25247 Length=147060 Score = 100 bits (110), Expect = 4e-16 Identities = 192/275 (70%), Gaps = 10/275 (4%) Strand=Plus/Minus Query 13722 AATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAACCATGAATCA 13781 |||||| | ||| | ||||| ||||||| || || || | || ||||||||||| Sbjct 144224 AATTACAGGGAGGCGTACGGGTTGTTTGCCTGTAATGGGATATTGTTTAACCATGAATCT 144165 Query 13782 CCGAGACGAGGTGCAGACTTT-GTGACCATGAAGATTACCGAGGGTATCAAACAAATCAT 13840 || || ||||| | ||| ||| ||||| ||||| || || | || | |||| Sbjct 144164 CCAAGGCGAGGAG-AGAATTTCGTGACTCGAAAGATAACAAGGGCTGTCGGAAGGATCAA 144106 Query 13841 GAAGGG--TGAAAAGGAGTTCATTGAAT-TGGGTAACATAAACGCGGAGAGAGATTGGGG 13897 || || || |||| | | || | | || || | || ||| |||||||||||| Sbjct 144105 GATTGGGTTGCAAAGCAA---ACTGTTTCTAGGCAATTTGAATGCGTCGAGAGATTGGGG 144049 Query 13898 TCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCC-GACG 13956 | ||| ||| |||||||||||||||||| | ||| | |||||||| |||||| |||| Sbjct 144048 TTTCGCTGGGGATTATGTTGAAGCTATGTGGATGATGTTACAACAAGA-GAAGCCTGACG 143990 Query 13957 AATATGTAGTAGCAACGGGTGAGACCCATTCAGTG 13991 | ||||| || ||||| | ||| | ||| | ||| Sbjct 143989 ATTATGTTGTGGCAACTGAGGAGTCGCATACTGTG 143955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620542497669360