Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq25679 107 2e-18 seq25760 96.9 4e-15 >seq25679 Length=787315 Score = 107 bits (118), Expect = 2e-18 Identities = 284/428 (66%), Gaps = 22/428 (5%) Strand=Plus/Plus Query 11536 TCAAGAATATCGACACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAA 11595 || |||||||| | | || || || ||||| || | || ||||| | | || ||| Sbjct 166690 TCCAGAATATCTGCTCTATTAGTTGCTGCAATAACAATGATACCAGTGTTACCCTCAAAA 166749 Query 11596 CCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATA 11655 || ||||||||||| | |||||||| | |||||||| | ||||| || | | Sbjct 166750 CCATCCATTTCTGTCAATAGCTGGTTAAGTGTCTGTTCTCTTTCATCATTTCC---CCCA 166806 Query 11656 CCACCTGCCGAA--CGCTT--CTTACCGACAGCGTCAATCTCATCGATGAATACGATACA 11711 ||| ||||| | ||| | | || ||||| ||||| ||||| | ||||| ||||| Sbjct 166807 CCAA-TGCCGGTGCCTCTTTGCCTTCCAACAGCATCAATTTCATCCACAAATACAATACA 166865 Query 11712 CGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTAC 11771 ||| || | |||| || ||| || ||||| || | || |||||||| || Sbjct 166866 AGGTGCATTTTCTTTGGCCTTTTTGAAGAGATCACGGACTCTAGAGGCACCAACACCAAC 166925 Query 11772 GAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATG------AAGGGAACATTAGACT 11824 ||||||||||| || | |||||| |||| ||| || ||||| || | Sbjct 166926 AAACATCTCAACAAACT------CAGAAC-CTGATATGGAGAAAAATGGAACGCCAGCTT 166978 Query 11825 CACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGG 11884 ||||||| || || ||| || |||||||| || || || |||| |||| | ||||| Sbjct 166979 CACCAGCAATTGCCTTAGCTAGAAGAGTCTTCCCAGTTCCTGGTGGACCAACCAGAAGAA 167038 Query 11885 CGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCA 11944 | || ||| || || ||| | || | | | ||| |||||||| || || || | Sbjct 167039 CACCTTTGGGAATGCGAGCCCCAACTGCAGTGAATCTCTCTGGCTTCTTTAGAAACTCAA 167098 Query 11945 CAATCTCC 11952 | | |||| Sbjct 167099 CCACCTCC 167106 >seq25760 Length=3792821 Score = 96.9 bits (106), Expect = 4e-15 Identities = 171/244 (70%), Gaps = 13/244 (5%) Strand=Plus/Plus Query 119510 AAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTC----CAGGCATGAGTC 119565 ||||||| |||| || ||||| | ||| || |||| || ||| | ||||| | | Sbjct 707927 AAGCCCT-CATCTCGTGAGATTAACTCGTT--TGAA--AATGTCAGACCCGGCATTAACC 707981 Query 119566 CTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACAC 119625 | | || || |||||||| || || || ||||||||||| ||||| || || || |||| Sbjct 707982 CACGCTTTTTAAGCCAAAATATCGCGCAGAAACTTCCAGAGAAGAAAATCCCTTCAACAC 708041 Query 119626 AGGCGAAAGCGAATAGACGCTCAGCAAAAGGT--CGAGACTTGTCGAACCACTTGAGAGC 119683 | |||||||| | | | ||||||||||| | |||| | ||| | ||| || | ||| Sbjct 708042 AAGCGAAAGCAATAATCCTCTCAGCAAAAGATTCCGAGCC--GTCTATCCATTTCAAAGC 708099 Query 119684 CCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTT 119743 ||| | || || | ||||||| || || || | ||| || | || | | ||||| Sbjct 708100 CCACTCCGCTTTCTTCGCTATGCAAGGAACCGTCTCGATAGCGTGAAACAAACGGTTCTT 708159 Query 119744 TTCA 119747 |||| Sbjct 708160 TTCA 708163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588786327641400