Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq25679 156 5e-33 seq25760 105 8e-18 seq25247 91.5 2e-13 >seq25679 Length=787315 Score = 156 bits (172), Expect = 5e-33 Identities = 289/420 (69%), Gaps = 8/420 (2%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 || || ||||| | | ||| || || || || |||| ||||| || | | |||||| Sbjct 166690 TCCAGAATATCTGCTCTATTAGTTGCTGCAATAACAATGATACCAGTGTTACCCTCAAAA 166749 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 |||||||| |||||||| || ||||||| || ||||| | ||||||||| | | | Sbjct 166750 CCATCCATTTCTGTCAATAGCTGGTTAAGTGTCTGTTCTCTTTCATCATTTCC---CCCA 166806 Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 ||| || | | | |||| |||| || |||||||| ||||| | || |||||||| Sbjct 166807 CCAATGCCGGTGCCTCTTTGCCTTCCAACAGCATCAATTTCATCCACAAATACAATACAA 166866 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 ||| |||||| ||| ||| |||||||| || || || ||| || ||||||||| Sbjct 166867 GGTGCATTTTCTTTGGCCTTTTTGAAGAGATCACGGACTCTAGAGGCACCAACACCAACA 166926 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||| ||||| | | | | | || | || || || || || |||||| || Sbjct 166927 AACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACGCCAGCTTCACCAGC 166985 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 ||| || || ||||||||||| || || ||||| ||| | || || |||| Sbjct 166986 AATTGCCTTAGCTAGAAGAGTCTTCCCAGTTCCTGGTGGACCAACCAGAAGAACACCTTT 167045 Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 ||||| || ||| | || | ||||||| || | ||| ||||| || || | ||| Sbjct 167046 GGGAATGCGAGCCCCAACTGCAGTGAATCTCTCTGGCTTCTTTAGAAACTCAACCACCTC 167105 >seq25760 Length=3792821 Score = 105 bits (116), Expect = 8e-18 Identities = 383/596 (64%), Gaps = 9/596 (2%) Strand=Plus/Plus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 ||||||||||| || || | || ||||| || || || ||||| | || ||||| Sbjct 707930 CCCTCATCTCGTGAGATTAACTCGTTTGAAAATGTCAGACCCGGCATTAACCCACGCTTT 707989 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | |||| | || |||||||| || |||||||| || || || ||||| || || Sbjct 707990 TTAAGCCAAAATATCGCGCAGAAACTTCCAGAGAAGAAAATCCCTTCAACACAAGCGAAA 708049 Query 117412 GCAAAAAGGCGCTCGGCGAAGGA--GCGAGACTTTGTGTCAAACCATTTCATTGCCCATT 117469 |||| || | ||| || || || |||| | ||| | |||||||| ||||| | Sbjct 708050 GCAATAATCCTCTCAGCAAAAGATTCCGAGCC-----GTCTATCCATTTCAAAGCCCACT 708104 Query 117470 TCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTTTCAG 117529 ||| |||||| | || || || || || | ||| || | ||| || | ||||||||| Sbjct 708105 CCGCTTTCTTCGCTATGCAAGGAACCGTCTCGATAGCGTGAAACAAACGGTTCTTTTCAT 708164 Query 117530 ATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATTTCAT 117589 || || || || | || | ||| || || |||| || | | ||| Sbjct 708165 TGGAGTCTTTGATATAAGTCTCCAACAAAAGAGAGTACATTTCAGAGTGGATGTTCTCAA 708224 Query 117590 TATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGCACTTCATCCGCAAAAT 117649 || | ||| | ||||||| | ||||| || | || || || | | |||| Sbjct 708225 TAGCGATTTGGAAACCGTAGAAAGCACGCGCCTCAGCCACTTGAACCTCTTTCATAAAAC 708284 Query 117650 TGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGGATGTACT 117709 | || || |||| || || || ||||| | || ||||| || |||| || Sbjct 708285 GGCCGGCGAGGTTTTCAAGGACGATACCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGAG 708344 Query 117710 TTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCAAGATCTTTGGACAAAT 117769 ||||| | |||||||| | | |||| | ||||| ||||||| || | || Sbjct 708345 AGATGAAGTGCTTTTCATCGGGAGTTAGGGATTCCCAGTGACGGAGATCTTGAGAGAGAT 708404 Query 117770 CAACTTCTTCCGCAGTCC-AATTGCTCATTTGAGCCTTTTTATAGAGTTCCCAGAGTTGT 117828 | ||||| || || |||| || || | || | || ||||| || | |||||| | || | Sbjct 708405 CCACTTCCTCTGCCGTCCAAAATGATGCTTCG-GCTTTTTTGTACATTTCCCAAATTTCT 708463 Query 117829 GGATACTTCAGGGGGAAGACTGTAAATCTGTTTAGGGTGGGGGCCAGAATAGGTTC 117884 || || | | ||||| | |||| || | || |||| || |||| ||||| Sbjct 708464 GGGTATTGGATTGGGAACATACAGAATCGGTCTGGGTTGGGAGCGAGAAGGGGTTC 708519 >seq25247 Length=147060 Score = 91.5 bits (100), Expect = 2e-13 Identities = 190/275 (69%), Gaps = 10/275 (4%) Strand=Plus/Minus Query 7029 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 7088 |||||| | ||| | ||||| ||||||| || || || | || ||||||||||| Sbjct 144224 AATTACAGGGAGGCGTACGGGTTGTTTGCCTGTAATGGGATATTGTTTAACCATGAATCT 144165 Query 7089 CCGAGACGAGGTGCAGACTTT-GTCACAAAGAAGATTACCGAGGGTATCAAACAAATCAT 7147 || || ||||| | ||| ||| || || ||||| || || | || | |||| Sbjct 144164 CCAAGGCGAGGAG-AGAATTTCGTGACTCGAAAGATAACAAGGGCTGTCGGAAGGATCAA 144106 Query 7148 GAAGGG--TGAAAAGGAGTTCATTGAAT-TGGGTAACATAAACGCGGAGAGAGATTGGGG 7204 || || || |||| | | || | | || || | || ||| |||||||||||| Sbjct 144105 GATTGGGTTGCAAAGCAA---ACTGTTTCTAGGCAATTTGAATGCGTCGAGAGATTGGGG 144049 Query 7205 TCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAAGCC-GACG 7263 | ||| ||| ||||||||||| |||||| | ||| | |||||||| |||||| |||| Sbjct 144048 TTTCGCTGGGGATTATGTTGAAGCTATGTGGATGATGTTACAACAAGA-GAAGCCTGACG 143990 Query 7264 AATATGTAGTAGCAACGGGTGAGACCCATTCAGTG 7298 | ||||| || ||||| | ||| | ||| | ||| Sbjct 143989 ATTATGTTGTGGCAACTGAGGAGTCGCATACTGTG 143955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589790804058120