Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq24687 127 2e-24 seq25599 82.4 9e-11 >seq24687 Length=27406 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | |||||||| || | || ||||||||||| ||||||||| Sbjct 5055 CCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTTAACATTGGAACAATACCA 5114 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| ||||| |||||| || || | || | ||||| ||| || Sbjct 5115 TTAGATGTCCCATTTGTTCCTCGAATATAGCTGCCTGTGGCACGAATATTGTGAATAGAG 5174 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| || | ||||||| || || ||||||||||| Sbjct 5175 ACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTTAGAGTATCATAAATG 5234 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| |||||||||||| |||| Sbjct 5235 CCTTCAATACTATCATCTTTCAT 5257 >seq25599 Length=502261 Score = 82.4 bits (90), Expect = 9e-11 Identities = 116/158 (73%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 48113 AGTATATAACTTCTCAAATTCATC-CCCATACACATTATCTAACCCAGGACATTCATTAG 48171 ||| ||||| ||||||||||| || ||| ||| || | | || |||||| |||||||| Sbjct 182829 AGTGTATAATTTCTCAAATTCTTCACCCCAACA-ATCAGCCAAACCAGGAGCTTCATTAG 182771 Query 48172 GACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCC 48231 | || | ||| ||||| ||||| | ||||| |||||| | ||| || |||| Sbjct 182770 GGCAAAACAAAGACCAGCTGCCATCACCTCGGACTCTTTCCATAAAGAGATCAGGAATCC 182711 Query 48232 AAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTC 48268 ||||||| ||| || ||||| |||| || ||||||| Sbjct 182710 AAAGAGC-ATAGAACAAATCTCTAGCTCGACGTTCTTC 182674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561927779887320