Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq23215 210 4e-49 >seq23215 Length=2883 Score = 210 bits (232), Expect = 4e-49 Identities = 300/416 (72%), Gaps = 11/416 (3%) Strand=Plus/Minus Query 22938 GTATTTCCCTTTGCGGTCGGCGTAGGAAACTTCGCACTCTTCATCAGATTCAAAGAACAG 22997 |||||| || |||||||| |||||| || ||||| | ||||| ||| || ||||| Sbjct 1959 GTATTTGCCGTTGCGGTCCTTGTAGGACACGTCGCAGACCTCATCGCTTTCGAAAAACAG 1900 Query 22998 AATTTGTGCGCAACCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTGGTATTGGAAAA 23057 | || ||||| || ||||| || |||||| ||||| || ||||| ||||| || Sbjct 1899 CACCTGCGCGCAGCCCTCGCCGGCATAGATCTTGGCCGGCAGCGGCGTGGTGTTGGAGAA 1840 Query 23058 CTCCAGAGTAAGCGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCC 23117 |||||| || | |||||| ||| || ||||| | |||||| ||||| ||||||||||| Sbjct 1839 CTCCAGCGTCACATAGCCTTCCCACTCCGGTTCGAACGGCGTCACGTTGACGATGATGCC 1780 Query 23118 GCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAA 23177 ||| ||||| || ||||| ||||| ||||||| | ||| ||||||||| ||| Sbjct 1779 GCAGCGCGCGTAGGTCGACTTGCCCAGGCAGACCGTCAGCACGCTGCGCGGAATGCGGAA 1720 Query 23178 GTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT-CAGGCCTTGGCCGT 23236 || |||| ||| ||||| ||||| ||||||||| ||||| ||| | | || Sbjct 1719 GTATTCCATGGTGCGGGCCAGCGCGAACGAGTTCGGCGGGATGATGCAGAC----GTCGC 1664 Query 23237 TTGGAACGTGCTTCGTAACGAAATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGCGT 23296 || |||| | || |||| | ||| || ||| ||||| |||||||| | | | Sbjct 1663 TTTTCACGT-CCACG-AACG-AGTTGGAGTC---GAAGTTCTTCGGATCGACGATGGTGC 1610 Query 23297 TATTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAACGAATATCGTAGCCGTAG 23352 | || | ||||||||| |||||||| || | |||| || || |||||||||||| Sbjct 1609 TGTTGATGTTGGTGAAGACCTTGAACTCATCGGCGCAGCGGATGTCGTAGCCGTAG 1554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897304541201040