Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq25310 113 3e-20 seq25634 104 2e-17 seq25716 96.9 3e-15 seq25319 96.9 3e-15 seq25706 89.7 4e-13 >seq25310 Length=177726 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || || | ||| | ||| || ||| |||||| |||||||||||||||| Sbjct 165849 CGCCACCGCGAAGACGGAGCACAAGATGGAGTGTGGACTCTTTCTGAATATTGTAATCAG 165908 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || | || ||||||||||| || ||||||||||| | ||| ||||| | | Sbjct 165909 CAAGCGTACGCCCATCCTCCAACTGCTTCCCTGCAAATATCAGCCTCTGCTGATCAGGTG 165968 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| |||||||| || ||| ||| ||| || | | | | || || ||||| Sbjct 165969 GAATCCCCTCCTTATCTTGAATTTTTGCTTTCACGTTATCAATTGTGTCCGAGCTCTCCA 166028 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 | |||| || || || || || ||||| || || || || ||||||||| Sbjct 166029 CTTCCAGTGTTATGGTCTTCCCTGTCAATGTCTTCACGAATATCTGCATC 166078 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||| || ||| |||||| |||||||| ||||| | ||| | || Sbjct 154263 AGACGGAGCACAAGATGGAGGGTGGACTCTTTCTGAATATTATAATCGGCCAGAGTACGT 154322 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || |||||||| || ||||||||||| | ||| ||||| | |||| |||||| Sbjct 154323 CCATCCTCTAACTGCTTCCCTGCAAATATCAGCCTCTGCTGATCAGGTGGAATCCCCTCC 154382 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| || ||| | | | | || || || ||||| | || Sbjct 154383 TTATCTTGGATCTTGGCCTTCACATTATCAATCGTATCAGAGCTTTCGACCTCTAGAGTT 154442 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | |||||||||||| |||||||| Sbjct 154443 ATGGTCTTGCCGGTGAGAGTTTTTACAAAGATCTGCAT 154480 >seq25634 Length=602113 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || | |||||| || || || ||||||||||||||| ||||||| Sbjct 348776 CCGCCACGAAGTCGGAGCACCAAGTGGAGTGTAGACTCTTTTTGAATATTATAATCAGCA 348717 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || || | ||| || || ||||| |||| | ||| ||||| | |||| Sbjct 348716 AGAGTGCGTCCATCCTCGAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGATCTGGGGGA 348657 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||| || ||| ||| | | || ||||| ||| || Sbjct 348656 ATACCCTCCTTGTCTTGAATTTTGGCTTTAACATTGTCAATAGTGTCTGAACTCTCAACT 348597 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || || | || |||||||| |||||||| Sbjct 348596 TCCAAGGTGATAGTCTTGCCAGTAAGGGTCTTTACAAAGATCTGCAT 348550 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||||| || | |||||| || || || || ||||| || || ||||||| Sbjct 348548 CCACCCCTTAATCGGAGCACCAAGTGGAGAGTTGATTCCTTTTGGATGTTATAATCAGCA 348489 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || || | |||||| || ||||| ||||||| || || |||| |||| Sbjct 348488 AGGGTGCGTCCATCCTCAAGCTGCTTGCCAGCAAAAATCAGTCTTTGCTGGTCCGGGGGA 348429 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| |||||| ||||||| | | || ||||| || ||| Sbjct 348428 ATACCCTCCTTGTCTTGAATCTTAGCTTTTACATTGTCAATAGTGTCTGAGCTTTCTACC 348369 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || || || || || || | ||||| || ||||| |||||| Sbjct 348368 TCAAGGGTGATAGTCTTGCCAGTTAGGGTTTTCACGAAAATTTGCATC 348321 >seq25716 Length=1210045 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || || ||||||||||||||| || |||| || | ||| Sbjct 962548 AGGCGGAGCACCAAATGAAGGGTAGACTCTTTTTGAATATTATAGTCAGCAAGTGTACGA 962489 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || || |||||||| | ||| ||||| | |||| || || Sbjct 962488 CCATCCTCTAGCTGCTTGCCAGCGAATATCAGCCTCTGCTGATCAGGTGGAATACCTTCT 962429 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | ||||| ||| ||||||| ||| Sbjct 962428 TTGTCCTGAATCTTAGCCTTGACATTGTCAATGGTGTCTGAACTCTCAACCTCCAGTGTA 962369 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||||| ||||| || ||||| Sbjct 962368 ATTGTCTTGCCAGTGAGGGTTTTCACAAAGATTTGCAT 962331 >seq25319 Length=181645 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||| | |||||| || || ||| ||| || ||||| ||||| |||| ||| | ||| Sbjct 59482 AGCCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCTAGGGTGCGA 59423 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| || || | |||||| || | ||||| |||||| Sbjct 59422 CCATCTTCAAGCTGCTTCCCAGCAAAGATAAGCCTCTGTTGGTCTGGGGGAATACCCTCC 59363 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || ||| || |||| ||| Sbjct 59362 TTGTCCTGAATCTTGGCCTTAACATTGTCAATTGTGTCCGAGCTCTCAACTTCCAAGGTA 59303 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || |||||||| ||||| Sbjct 59302 ATAGTCTTGCCAGTGAGGGTCTTCACAAAAATTTGCAT 59265 >seq25706 Length=1095516 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || | || || || |||||| || ||||| ||||||| | | | Sbjct 698932 AGACGCAAGACAAGGTGAAGAGTAGACTCTTTCTGGATATTATAATCAGCCAAGGTCCTT 698991 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||||| || ||||| |||| || ||| ||||| | |||| || ||| Sbjct 698992 CCATCTTCAAGTTGCTTCCCAGCAAAAATCAATCTCTGCTGATCAGGAGGAATCCCTTCC 699051 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| || ||| | | | || || ||||||||||| ||| Sbjct 699052 TTATCCTGAATCTTAGCCTTAACATTATCAATAGTATCGCTACTCTCCACCTCCAAAGTA 699111 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || ||||| |||||||| || ||||||||||||||| Sbjct 699112 ATAGTCTTTCCAGTCAAAGTCTTAACAAAAATCTGCATC 699150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380817990712449