Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq21733 120 5e-22 >seq21733 Length=1815 Score = 120 bits (132), Expect = 5e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 172329 GACGATCAGGATCGGGAAGATGAAGCGCATGCCGAACACGGCGATGATGATGCCGACGCC 172388 ||||||||| | ||||||||| | |||||||||||||| |||| | ||||||||| Sbjct 956 GACGATCAGCAGCGGGAAGATCAGCCGCATGCCGAACACCGCGACCAGGATGCCGACCGT 1015 Query 172389 CAGGAAGAGCTTCTTCCACTTCTCGTCCCAATTCTGAAGAACGTGGGCGTTGACGACGGC 172448 |||||| ||||| ||| |||| ||||| | || || ||||||||| || || Sbjct 1016 CAGGAACAGCTTGCGCCAGAATTCGTTCCAATGGCGCAGCACCGAGGCGTTGACCACCGC 1075 Query 172449 GTTGTCGAACGACAGCGAGATTTCCAGGATCGCCAG 172484 |||||||||||||||||| | ||||| ||| |||| Sbjct 1076 GTTGTCGAACGACAGCGACACTTCCATGATGCCCAG 1111 Score = 96.9 bits (106), Expect = 6e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171792 CAGCGTCAGTTCCCGAACGGCCAGGGCGCCCACGCCGAGACCCACCATGATCCAGACGAT 171851 || |||||| ||| ||| || ||||| | | | || |||| |||||| ||||| Sbjct 371 CACCGTCAGCGACCGCACGAACATCGCGCCGATGGCCAGCCCCAGCATGATGACGACGAC 430 Query 171852 GTTGCTCGTCAGTGCGAAGGCGCCGATGACGCCGTCAAACGAGAAGCTGGCGTCCAGGAC 171911 || | | || | |||||||||||||| |||||||| || ||| ||||||||| || Sbjct 431 GTCGGTGGTGATGGCGAAGGCGCCGATCACGCCGTCGAAGCTGAACGAGGCGTCCAGCAC 490 Query 171912 TTCCAGGTAGATGAAGCCGCCGATGC 171937 ||||||||| | ||||||||||| || Sbjct 491 TTCCAGGTACAGGAAGCCGCCGAAGC 516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895477929627960