Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq25319 89.7 4e-13 seq25634 84.2 2e-11 >seq25319 Length=181645 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | || || || ||||| ||| || |||| ||| Sbjct 58581 ATGCAAATCTTTGTTAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTGGAAAGCTCA 58640 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | || ||| ||| ||||| ||||| | || ||||||| Sbjct 58641 GACACCATCGACAATGTGAAAGCAAAGATCCAAGACAAGGAGGGGATCCCTCCAGATCAA 58700 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || | |||||||| || ||||| | |||||| | ||| | || || |||||| Sbjct 58701 CAAAGGTTGATCTTTGCTGGAAAACAGCTCGAAGATGGTCGCACTCTTGCTGACTATAAC 58760 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||| || || || || ||| |||| Sbjct 58761 ATTCAAAAGGAGTCAACCCTCCACTTGGT 58789 >seq25634 Length=602113 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || |||||||| || | || || || || || ||| ||| || |||| Sbjct 348550 ATGCAGATCTTTGTAAAGACCCTTACTGGCAAGACTATCACCTTGGAAGTTGAGAGTTCA 348609 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | || || |||| || ||||| ||||| | ||| |||||| Sbjct 348610 GACACTATTGACAATGTTAAAGCCAAAATTCAA-GACAAGGAGGGTATTCCCCCAGATCA 348668 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| | |||||||| || ||||| | || ||| ||| | || |||||||| Sbjct 348669 GCAGAGGTTGATCTTTGCTGGGAAACAGCTCGAGGATGGACGCACTCTTGCTGATTATAA 348728 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||||||||| ||||| || ||| |||| Sbjct 348729 TATTCAAAAAGAGTCTACACTCCACTTGGT 348758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425271228609177