Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq25679 143 3e-29 seq25760 105 8e-18 >seq25679 Length=787315 Score = 143 bits (158), Expect = 3e-29 Identities = 185/254 (73%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| ||||||||||||||||| |||||| || || || |||||||| ||| ||| Sbjct 166940 TTTGTTGAGATGTTTGTTGGTGTTGGTGCCTCTAGAGTCCGTGATCTCTTCAAAAAGGCC 166881 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 |||||| ||| |||||||| || | ||||| |||||||| || || | |||| | Sbjct 166880 AAAGAAAATGCACCTTGTATTGTATTTGTGGATGAAATTGATGCTGTTGGAAGGCAAAGA 166821 Query 175516 AGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572 || | || |||| | | |||||| || |||||||| ||| |||| || ||| | Sbjct 166820 GGCACCGGCATTGGTGGG---GGAAATGATGAAAGAGAACAGACACTTAACCAGCTATTG 166764 Query 175573 ACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGC 175632 || || |||||||| ||||| | | ||||| || | |||||||| || |||||| | Sbjct 166763 ACAGAAATGGATGGTTTTGAGGGTAACACTGGTATCATTGTTATTGCAGCAACTAATAGA 166704 Query 175633 GTGGATATCCTTGA 175646 | ||||| || || Sbjct 166703 GCAGATATTCTGGA 166690 >seq25760 Length=3792821 Score = 105 bits (116), Expect = 8e-18 Identities = 383/596 (64%), Gaps = 9/596 (2%) Strand=Plus/Minus Query 64618 GAACCTATTCTGGCCCCCACCCTAAACAGATTTACAGTCTTCCCCCTGAAGTATCCACAA 64677 ||||| |||| || |||| || | || |||| | ||||| | | || ||| || Sbjct 708519 GAACCCCTTCTCGCTCCCAACCCAGACCGATTCTGTATGTTCCCAATCCAATACCCAGAA 708460 Query 64678 CTCTGGGAACTCTATAAAAAGGCTCAAATGAGCAATT-GGACTGCGGAAGAAGTTGATTT 64736 | |||||| | || ||||| || | || | || || |||| || || ||||| ||| | Sbjct 708459 ATTTGGGAAATGTACAAAAAAGC-CGAAGCATCATTTTGGACGGCAGAGGAAGTGGATCT 708401 Query 64737 GTCCAAAGATCTTGACGACTGGAAGACCCTGAATGAAAATGAAAAGAAATTCATAAAGTA 64796 || ||||||| ||||| | |||| | | |||||||| | ||||| | Sbjct 708400 CTCTCAAGATCTCCGTCACTGGGAATCCCTAACTCCCGATGAAAAGCACTTCATCTCTCA 708341 Query 64797 CATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATCAATAACAATTT 64856 | |||| || ||||| || | ||||| || || || |||| || || | ||| Sbjct 708340 CGTCCTCGCCTTCTTCGCCGCCTCCGACGGTATCGTCCTTGAAAACCTCGCCGGCCGTTT 708281 Query 64857 TGCGGATGAAGTGCAGATAAGCGAAGCGCGCTCATTCTACGCATATCAATGCCATAATGA 64916 | | | || || || | || ||||| | ||||||| | ||| | || ||| Sbjct 708280 TATGAAAGAGGTTCAAGTGGCTGAGGCGCGTGCTTTCTACGGTTTCCAAATCGCTATTGA 708221 Query 64917 AATGGTTCATGGCGAAACATATTCAAAATTGATTGACAAATACATTAAGGATGGATCTGA 64976 | | || |||| || || ||| | || | || || || || ||| Sbjct 708220 GAACATCCACTCTGAAATGTACTCTCTTTTGTTGGAGACTTATATCAAAGACTCCAATGA 708161 Query 64977 AAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATG 65036 |||||| | || ||| | || ||| | || || || || || | |||||| ||| | || Sbjct 708160 AAAGAACCGTTTGTTTCACGCTATCGAGACGGTTCCTTGCATAGCGAAGAAAGCGGAGTG 708101 Query 65037 GGCAATGAAATGGTTTGACACAAAGTCTCGC--TCCTTCGCCGAGCGCCTTTTTGCGTTT 65094 ||| |||||||| | ||| | |||| || || || ||| | || |||| || Sbjct 708100 GGCTTTGAAATGGATAGAC-----GGCTCGGAATCTTTTGCTGAGAGGATTATTGCTTTC 708046 Query 65095 GCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAG 65154 || ||||| || || || |||||||| || |||||||| || | |||| | || ||| Sbjct 708045 GCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGTTTCTGCGCGATATTTTGGCTTAAAAAG 707986 Query 65155 CGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGG 65210 || || | ||||| || || || ||||| || | || || ||||||||||| Sbjct 707985 CGTGGGTTAATGCCGGGTCTGACATTTTCAAACGAGTTAATCTCACGAGATGAGGG 707930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596377482217440