Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq25310 141 2e-28 seq25744 118 2e-21 seq25706 111 3e-19 seq25716 105 1e-17 seq25319 104 4e-17 >seq25310 Length=177726 Score = 141 bits (156), Expect = 2e-28 Identities = 173/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || || |||||||| || || | ||| | || | ||||| ||||||| Sbjct 154701 ATTTGCATGCCTCCCCTCAATCGGAGAACTAAATGAAGAGTTGATTCTTTCTGAATATTA 154760 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | | ||| || ||| || | |||||||||||| || || | | ||||||| Sbjct 154761 TAATCTGCAAGCGTCCTGCCATCTTCGAGTTGTTTTCCGGCGAAGATCAGACGCTGTTGA 154820 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 |||||||| || ||||| |||||||| || |||| ||||| || ||| || ||||| Sbjct 154821 TCAGGAGGGATGCCTTCCTTATCTTGGATCTTGGCTTTTACGTTATCAATTGTGTCGGAG 154880 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || |||||||| || || || || || ||||| ||||| |||||||| Sbjct 154881 CTCTCGACCTCAAGAGTTATGGTCTTGCCGGTGAGGGTTTTGACAAAGATTTGCAT 154936 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || |||||||| ||||| || ||||| | || | ||| || ||| ||||| || Sbjct 166304 ATCCCTCCTCTCAACCGAAGAACTAGATGAAGGGTCGACTCCTTCTGAATGTTATAATCT 166363 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | |||||||||||| || || | | ||||||||||||| Sbjct 166364 GCAAGGGTCCTGCCATCTTCGAGTTGTTTTCCGGCGAAGATCAGACGCTGTTGATCAGGA 166423 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || |||| ||||| || ||| || ||||| ||| Sbjct 166424 GGGATGCCTTCCTTGTCTTGGATCTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCG 166483 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| || || || || || || || ||||| |||||||| Sbjct 166484 ACCTCAAGAGTTATGGTCTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 166533 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||||||||| || |||||||| | || | |||||| || ||||| || Sbjct 154479 ATGCCCCCTCTCAATCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTATAATCA 154538 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||| || ||| || | || |||||||| || |||| ||||| |||||||| Sbjct 154539 GCAAGCGTCCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATTAGCCTCTGCTGATCAGGC 154598 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| |||||||| || |||| || | || || || || || ||| Sbjct 154599 GGGATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTATCGATCGTGTCAGAGCTCTCC 154658 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| || || || || || || || ||||| |||||||| Sbjct 154659 ACCTCGAGAGTTATGGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 154708 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || || || ||||| | || | |||||| ||||||||| |||| Sbjct 154253 ACCACCGCGAAGACGGAGCACAAGATGGAGGGTGGACTCTTTCTGAATATTATAATCGGC 154312 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | ||| ||||| || || || ||||| || | ||||| |||||||| || Sbjct 154313 CAGAGTACGTCCATCCTCTAACTGCTTCCCTGCAAATATCAGCCTCTGCTGATCAGGTGG 154372 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || || || |||||||| || |||| || | ||| ||| ||||| || || || Sbjct 154373 AATCCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATCGTATCAGAGCTTTCGAC 154432 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||||| || || || || || ||||||||||| || ||||| Sbjct 154433 CTCTAGAGTTATGGTCTTGCCGGTGAGAGTTTTTACAAAGATCTGCAT 154480 Score = 111 bits (122), Expect = 3e-19 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| || | | || || || || || | |||| ||| || || ||| Sbjct 154929 ATTTGCATACCGCCACGGAGACGGAGAACTAGGTGAAGAGTAGACTCCTTCTGGATGTTA 154988 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || |||| || || | || || | ||| |||||||| || || || || ||||| Sbjct 154989 TAATCGGCCAAAGTACGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAACCTTTGTTGG 155048 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || |||||||||||| |||| || |||| || | ||| || ||||| ||| Sbjct 155049 TCAGGTGGAATTCCTTCTTTACCTTGGATCTTGGCCTTGACATTATCGATGGTATCAGAA 155108 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||| || || ||||| ||||||||||| |||| ||||| || || || ||||| || Sbjct 155109 CTCTCCACCTCGAGAGTAATAGTTTTACCGGTTAAGGTTTTGACGAAGATCTGCATATT 155167 >seq25744 Length=1702523 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || ||||||||||| || ||||||||||| |||| ||| || || || ||||| | Sbjct 948294 CCTCCTCTCAATCGCAGCACCAGATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCGCA 948235 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || | || || | ||| ||||| || || |||| | || || || || || Sbjct 948234 AGTGTACGGCCGTCTTCGAGTTGCTTTCCTGCGAAGATTAGCCGTTGCTGGTCCGGTGGG 948175 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || ||||| || ||||| || |||| || | ||| || |||||||| || ||||| Sbjct 948174 ATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTGTCGATGGTATCGGAGGATTCAACC 948115 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| ||||| || ||||| ||||| ||||| || || || ||||| || Sbjct 948114 TCTAGGGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 948065 >seq25706 Length=1095516 Score = 111 bits (122), Expect = 3e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 193127 TTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATA 193186 ||| | |||||| | || || | || || || | |||| |||||| |||||||| Sbjct 698916 TTAAAAACCACCGCGCAGACGCAAGACAAGGTGAAGAGTAGACTCTTTCTGGATATTATA 698975 Query 193187 GTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATC 193246 || | || || || ||| || | ||| || || |||||||| |||||||| ||||| Sbjct 698976 ATCAGCCAAGGTCCTTCCATCTTCAAGTTGCTTCCCAGCAAAAATCAATCTCTGCTGATC 699035 Query 193247 AGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGA 193306 |||||| || ||||| ||||| || || || | || | ||| |||||||||| | Sbjct 699036 AGGAGGAATCCCTTCCTTATCCTGAATCTTAGCCTTAACATTATCAATAGTATCGCTACT 699095 Query 193307 CTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || | ||| ||||| || || || | || || ||||| || ||||| Sbjct 699096 CTCCACCTCCAAAGTAATAGTCTTTCCAGTCAAAGTCTTAACAAAAATCTGCAT 699149 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||| || | | ||||| || || || | ||| | ||||| ||||| Sbjct 699369 AATTTGCATACCTCCACGGAGACGAAGCACAAGGTGAAGTGTTGATTCTTTCTGGATATT 699428 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || | || || | ||| || | |||||||| ||||| |||| || || || Sbjct 699429 ATAATCAGCCAAAGTACGCCCATCTTCAAGCTGTTTTCCAGCAAAGATTAGCCTTTGCTG 699488 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || ||||||||||| || || || || | || | ||| |||||| ||| Sbjct 699489 ATCTGGGGGAATTCCTTCTTTGTCCTGAATCTTTGCCTTGACATTATCAATAGTGTCGCT 699548 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||| ||||| || || || || || | ||||| || || || ||||| Sbjct 699549 GCTCTCAACTTCAAGAGTAATGGTCTTTCCCGTCAAGGTTTTGACGAAGATCTGCAT 699605 >seq25716 Length=1210045 Score = 105 bits (116), Expect = 1e-17 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | | || || |||| ||| | |||| |||||| ||||||| Sbjct 962566 ATTTGCATGCCACCACGGAGGCGGAGCACCAAATGAAGGGTAGACTCTTTTTGAATATTA 962507 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | | || | | ||| |||| || || || || || || | ||||| ||| Sbjct 962506 TAGTCAGCAAGTGTACGACCATCCTCTAGCTGCTTGCCAGCGAATATCAGCCTCTGCTGA 962447 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || |||||||| || || || || | || | ||| ||| || || ||| Sbjct 962446 TCAGGTGGAATACCTTCTTTGTCCTGAATCTTAGCCTTGACATTGTCAATGGTGTCTGAA 962387 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| || || || || || || || || || ||||| ||||| |||||||| Sbjct 962386 CTCTCAACCTCCAGTGTAATTGTCTTGCCAGTGAGGGTTTTCACAAAGATTTGCAT 962331 Score = 87.8 bits (96), Expect = 3e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | | |||||| |||| || | |||| ||| || |||||| Sbjct 962338 ATTTGCATGCCACCACGTAGTCGAAGAACCAAGTGAAGAGTAGACTCCTTCTGAATATTG 962279 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | | || | ||| || | ||||| || ||||| || | |||||||| Sbjct 962278 TAATCAGCAAGTGTGCGGCCATCCTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGTTGG 962219 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || ||||||||||| || || | || | ||| ||| || || || Sbjct 962218 TCTGGCGGGATACCCTCTTTATCTTGGATCTTAGCCTTGACATTGTCAATGGTGTCAGAG 962159 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || |||||||| || ||||| || ||||| || || ||||| Sbjct 962158 CTTTCCACCTCAAGGGTGATAGTTTTGCCAGTTAGTGTCTTTACGAAGATCTGCAT 962103 >seq25319 Length=181645 Score = 104 bits (114), Expect = 4e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || || |||||||||| ||| || || || || || | | |||| | Sbjct 59935 CGCAGGACAAGGTGCAATGTAGACTCCTTCTGGATGTTGTAATCTGCCAGGGTTCGGCCA 59876 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||| || || ||||| || | || || || || || || || ||||| || Sbjct 59875 TCCTCCAATTGCTTCCCAGCAAAGATCAGCCTTTGCTGGTCCGGTGGAATCCCTTCCTTG 59816 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||| | || | ||| ||| ||||| || ||||||||| ||||| ||| Sbjct 59815 TCCTGGATTTTAGCCTTCACATTGTCAATGGTATCTGAGCTCTCAACTTCAAGAGTGATA 59756 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || |||||||||||||| Sbjct 59755 GTTTTCCCAGTCAGAGTCTTGACAAATATTTGCAT 59721 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | ||||| |||| || | || | ||| || ||| |||||||| Sbjct 58810 ATACCACCTCTGAGGCGAAGAACCAAGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCA 58751 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | ||| || | |||||||| ||||| || || || |||||||| ||| Sbjct 58750 GCAAGAGTGCGACCATCTTCGAGCTGTTTTCCAGCAAAGATCAACCTTTGTTGATCTGGA 58691 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || ||||| || || | ||| | ||| || || || || || Sbjct 58690 GGGATCCCCTCCTTGTCTTGGATCTTTGCTTTCACATTGTCGATGGTGTCTGAGCTTTCC 58631 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || ||||| ||||| |||||||| Sbjct 58630 ACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTAACAAAGATTTGCAT 58581 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| | || || |||| || | || | ||| || ||| || Sbjct 59273 AATTTGCATACCACCTCTGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTT 59214 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||||| | || | ||| || | ||||| || ||||| || | ||||| || Sbjct 59213 GTAGTCGGCGAGGGTACGGCCATCCTCCAGCTGTTTGCCAGCAAAGATGAGCCTCTGCTG 59154 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || ||||| || || || || |||| || | ||| |||||| || || Sbjct 59153 GTCTGGGGGAATACCTTCCTTGTCCTGAATCTTGGCCTTAACATTGTCAATAGTGTCCGA 59094 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||| | || ||||| || || || || || || ||||| |||||||| Sbjct 59093 GCTCTCAACTTCCAAGGTAATAGTCTTGCCAGTGAGGGTCTTCACAAAAATTTGCAT 59037 Score = 89.7 bits (98), Expect = 9e-13 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| | || || |||| || | || | ||| || ||| || Sbjct 59045 AATTTGCATACCACCTCTAAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTT 58986 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| | | || | ||| || | ||||| || ||||| || | ||||| || Sbjct 58985 GTAGTCCGCGAGGGTACGGCCATCCTCCAGCTGTTTGCCAGCAAAGATGAGCCTCTGCTG 58926 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || ||||| || || || ||||| |||| ||| | ||| ||| || || || Sbjct 58925 GTCTGGGGGGATTCCCTCCTTGTCCTGTATCTTGGCTTTAACATTGTCAATTGTGTCTGA 58866 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| |||| || ||||| || || || || || || ||||| || ||||| Sbjct 58865 GCTCTCAACCTCTAAGGTAATAGTCTTGCCAGTGAGAGTCTTCACAAAAATCTGCAT 58809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899364677546160