Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq25760 183 4e-41 seq25706 118 2e-21 seq25310 104 3e-17 seq25634 91.5 2e-13 seq25319 87.8 3e-12 seq25716 84.2 3e-11 >seq25760 Length=3792821 Score = 183 bits (202), Expect = 4e-41 Identities = 381/566 (67%), Gaps = 13/566 (2%) Strand=Plus/Plus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 |||||||| ||||| |||||| || ||||||| || ||||| ||||| ||| || Sbjct 707906 AAACACGCGAAATCGCAGTGTAAGCCCTCATCTCGTGAGATTAACTCGTTTGAAAATGTC 707965 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 | || ||||||| || | ||||| ||||||||||||| |||||| | ||| ||| Sbjct 707966 AGACCCGGCATTAACCCACGCTTTTTAAGCCAAAATATCGCGCAGAAACTTCCAGAGAAG 708025 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTC 18334 || || || ||||| || ||||| || || | || ||||||||| ||| || Sbjct 708026 AAAATCCCTTCAACACAAGCGAAAGCAATAATCCTCTCAGCAAAA---GATTCCGAGCCG 708082 Query 18335 AGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCA 18394 ||||||||| ||||| || ||| || || || | |||| ||||| Sbjct 708083 TCTATCCATTTCAAAGCCCACTCCGCTTTCTTCGCTATGCAAGGAACCGTCTCGATAGCG 708142 Query 18395 TTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 | ||||||| | ||||| ||||| ||||| |||||||| || | || | ||| ||| Sbjct 708143 TGAAACAAACGGTTCTTTTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGAGAGTAC 708202 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 |||||||| || ||| | || ||||| || || |||| || || | | ||||| | Sbjct 708203 ATTTCAGAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAGAAAGCACGCGCCTCAGCC 708262 Query 18515 TATTGAATCTCGCT-ATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGA 18573 ||||| ||| | |||||| | | | | || ||| || |||||||| | | Sbjct 708263 ACTTGAACCTCTTTCATAAAA-CGGCCGGCGAGGTTTTCAAGGACGATACCGTCGGAGGC 708321 Query 18574 TGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTG----T 18629 ||||| || || | || | ||||| || ||||||| | ||| | | | Sbjct 708322 GGCGAAGAAGGCGAGGACGTGAGAGATGAAGTGCTTTTCAT----CGGGAGTTAGGGATT 708377 Query 18630 TCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGG 18689 ||| | | | ||||| || ||||| ||||| || | |||||||| |||| ||||| Sbjct 708378 CCCAGTGACGGAGATCTTGAGAGAGATCCACTTCCTCTGCCGTCCAAAATGATGCTTCGG 708437 Query 18690 CCTGTTTGTACATTTTATAAATATCT 18715 | | ||||||||||| |||| ||| Sbjct 708438 CTTTTTTGTACATTTCCCAAATTTCT 708463 >seq25706 Length=1095516 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || ||||||||||| |||||||| || || || || | Sbjct 699149 ATGCAGATTTTTGTTAAGACTTTGACTGGAAAGACTATTACTTTGGAGGTGGAGAGTAGC 699090 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || ||| || || ||||| ||||| || ||||| || || Sbjct 699089 GATACTATTGATAATGTTAAGGCTAAGATTCAGGATAAGGAAGGGATTCCTCCTGATCAG 699030 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||||| ||| || ||||| || |||||| || || || | ||||||||| Sbjct 699029 CAGAGATTGATTTTTGCTGGGAAGCAACTTGAAGATGGAAGGACCTTGGCTGATTATAAT 698970 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || ||||| Sbjct 698969 ATCCAGAAAGAGTCTACTCTTCA 698947 >seq25310 Length=177726 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | || || || || || || | || ||||| || Sbjct 154936 ATGCAAATCTTTGTCAAAACCCTCACCGGCAAGACCATAACTCTTGAGGTCGAGAGCTCC 154877 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| ||| || || |||||||| |||||||| ||||| || ||| Sbjct 154876 GACACAATTGATAACGTAAAAGCCAAGATCCAAGATAAGGAAGGCATCCCTCCTGATCAA 154817 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | |||| | ||||| || || ||||||||| ||| || | ||||||||||| Sbjct 154816 CAGCGTCTGATCTTCGCCGGAAAACAACTCGAAGATGGCAGGACGCTTGCAGATTATAAT 154757 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| | || ||||||||||| | |||| || || || Sbjct 154756 ATTCAGAAAGAATCAACTCTTCATTTAGTTCTCCGATTGAGGGGAGG 154710 Score = 102 bits (112), Expect = 1e-16 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 || || ||||| || ||| | ||||| || || || ||||| ||||| | || || || Sbjct 166767 AAAAATATGCAGATCTTTGTCAAAACTTTAACCGGGAAAACAATTACTCTGGAGGTGGAG 166708 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 ||||||| || || ||||| || || ||||| |||||||| || || || Sbjct 166707 AGCTCTGATACCATCGATAATGTGAAGGCCAAGATCCAAGACAAAGAAGGGATCCCACCT 166648 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || |||||||| ||||| | ||||| |||||||||||||| | | ||||| | ||| Sbjct 166647 GACCAACAAAGGTTGATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGTACTTTGGCCGAT 166588 Query 155997 TATAATATATCCAAA 156011 |||| | ||||||| Sbjct 166587 TATA--ACATCCAAA 166575 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || || | ||||| || || || ||||||||||| | || || || | Sbjct 155167 AATATGCAGATCTTCGTCAAAACCTTAACCGGTAAAACTATTACTCTCGAGGTGGAGAGT 155108 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||||| || || || || || || |||| ||||||||| || || || || Sbjct 155107 TCTGATACCATCGATAATGTCAAGGCCAAGATCCAAGGTAAAGAAGGAATTCCACCTGAC 155048 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||| ||||| | ||||| ||||| |||||||| | | ||||| | |||||| Sbjct 155047 CAACAAAGGTTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCGTACTTTGGCCGATTAT 154988 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || || ||| | || ||||| |||| Sbjct 154987 AACATCCAGAAGGAGTCTACTCTTCACCTAGT 154956 >seq25634 Length=602113 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | ||||| || ||||| || || ||||| || ||| Sbjct 348550 ATGCAGATCTTTGTAAAGACCCTTACTGGCAAGACTATCACCTTGGAAGTTGAGAGTTCA 348609 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || ||| ||||| ||||| || || || || || ||||| || Sbjct 348610 GACACTATTGACAATGTTAAAGCCAAAATTCAAGACAAGGAGGGTATTCCCCCAGATCAG 348669 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||| || || |||||||| ||| | ||| | | ||||||||| Sbjct 348670 CAGAGGTTGATCTTTGCTGGGAAACAGCTCGAGGATGGACGCACTCTTGCTGATTATAAT 348729 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | || || || || ||| | || | | |||||| Sbjct 348730 ATTCAAAAAGAGTCTACACTCCACTTGGTGCTCCGACTTCGTGGCGGT 348777 >seq25319 Length=181645 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| ||||||| | ||||| || || || || | || || ||| || Sbjct 58581 ATGCAAATCTTTGTTAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTGGAAAGCTCA 58640 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || |||||| || || ||||| || || || || |||||||| ||| Sbjct 58641 GACACCATCGACAATGTGAAAGCAAAGATCCAAGACAAGGAGGGGATCCCTCCAGATCAA 58700 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||||| ||||| | ||| || || |||||||||||| Sbjct 58701 CAAAGGTTGATCTTTGCTGGAAAACAGCTCGAAGAT 58736 Score = 86.0 bits (94), Expect = 9e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || ||||||| |||||||| || | ||||| || || Sbjct 59721 ATGCAAATATTTGTCAAGACTCTGACTGGGAAAACTATCACTCTTGAAGTTGAGAGCTCA 59780 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| |||||| || || || ||||| || || || || || Sbjct 59781 GATACCATTGACAATGTGAAGGCTAAAATCCAGGACAAGGAAGGGATTCCACCGGACCAG 59840 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| |||| | ||| || ||||| | || ||| | |||| | ||||||| || Sbjct 59841 CAAAGGCTGATCTTTGCTGGGAAGCAATTGGAGGATGGCCGAACCCTGGCAGATTACAAC 59900 Query 156003 AT 156004 || Sbjct 59901 AT 59902 >seq25716 Length=1210045 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || ||| | ||||| |||||||| || | || || ||| ||| Sbjct 962103 ATGCAGATCTTCGTAAAGACACTAACTGGCAAAACTATCACCCTTGAGGTGGAAAGCTCT 962162 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||| || ||||||||||| || || || ||||| ||| Sbjct 962163 GACACCATTGACAATGTCAAGGCTAAGATCCAAGATAAAGAGGGTATCCCGCCAGACCAA 962222 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | ||| ||||| ||||| || ||| | | || | | ||||| ||| Sbjct 962223 CAGAGGCTGATCTTTGCTGGTAAACAGCTGGAGGATGGCCGCACACTTGCTGATTACAAT 962282 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| | || ||||| || || Sbjct 962283 ATTCAGAAGGAGTCTACTCTTCACTTGGT 962311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731636309770800