Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq25706 136 8e-27 seq25310 125 1e-23 seq25716 113 9e-20 seq25634 109 1e-18 seq25319 107 4e-18 seq25337 95.1 2e-14 >seq25706 Length=1095516 Score = 136 bits (150), Expect = 8e-27 Identities = 171/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 192306 AATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 || |||||| | ||||| || || | || | ||||| |||||| |||||||||||| Sbjct 698919 AAAACCACCGCGCAGACGCAAGACAAGGTGAAGAGTAGACTCTTTCTGGATATTATAATC 698978 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || || || | | |||| || | ||| || |||||||| || |||||||| |||||||| Sbjct 698979 AGCCAAGGTCCTTCCATCTTCAAGTTGCTTCCCAGCAAAAATCAATCTCTGCTGATCAGG 699038 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| ||||| || || ||| || |||||| |||| ||| | | || Sbjct 699039 AGGAATCCCTTCCTTATCCTGAATCTTAGCCTTAACATTATCAATAGTATC--GCTACTC 699096 Query 192486 T--ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || | |||||| || || ||||| || || |||| ||| |||||||| Sbjct 699097 TCCACCTCCAAAGTAATAGTCTTTCCAGTCAAAGTCTTAACAAAAATCTGCAT 699149 Score = 109 bits (120), Expect = 1e-18 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 192346 TCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAG 192405 ||||| |||||||||||||| || || || |||| || | ||||| ||||||||| Sbjct 699415 TCTTTCTGGATATTATAATCAGCCAAAGTACGCCCATCTTCAAGCTGTTTTCCAGCAAAG 699474 Query 192406 ATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 192465 |||| || || ||||| || || ||||||||||| || || || || || |||||| Sbjct 699475 ATTAGCCTTTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGAATCTTTGCCTTGACATTA 699534 Query 192466 GTTATAGAATCTGACGAT-TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAAT 192524 |||| || | | | || ||||| ||||||||||| || || || || ||||| | Sbjct 699535 TCAATAGTGTC-GCTGCTCTCAACTTCAAGAGTAATGGTCTTTCCCGTCAAGGTTTTGAC 699593 Query 192525 AAATATCTGCAT 192536 || |||||||| Sbjct 699594 GAAGATCTGCAT 699605 >seq25310 Length=177726 Score = 125 bits (138), Expect = 1e-23 Identities = 175/244 (72%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||||| | |||| || | ||||| ||| || ||| |||||||| Sbjct 154935 ATACCGCCACGGAGACGGAGAACTAGGTGAAGAGTAGACTCCTTCTGGATGTTATAATCG 154994 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || | || || | ||| || || || ||||| || || ||||| |||||| Sbjct 154995 GCCAAAGTACGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAACCTTTGTTGGTCAGGT 155054 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||||||| |||| || || || |||||| || | ||| || || Sbjct 155055 GGAATTCCTTCTTTACCTTGGATCTTGGCCTTGACATTATCGATGGTATCAGAACTCTCC 155114 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT-TTTATTAGA 192545 || || |||||||| |||||||| ||||| ||||| | || |||||||| ||| ||| Sbjct 155115 ACCTCGAGAGTAATAGTTTTACCGGTTAAGGTTTTGACGAAGATCTGCATATTTGAAAGA 155174 Query 192546 AAAA 192549 |||| Sbjct 155175 AAAA 155178 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | |||||| | || | ||| | || | |||||| ||||||||||| | Sbjct 154253 ACCACCGCGAAGACGGAGCACAAGATGGAGGGTGGACTCTTTCTGAATATTATAATCGGC 154312 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || ||| |||| || || || || || ||||| || | ||||| ||||||||||| Sbjct 154313 CAGAGTACGTCCATCCTCTAACTGCTTCCCTGCAAATATCAGCCTCTGCTGATCAGGTGG 154372 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || |||||||| || || || |||||| || | ||| || ||| || Sbjct 154373 AATCCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATCGTATCAGAGCTTTCGAC 154432 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| ||||| || || || | ||||| | ||| |||||||| Sbjct 154433 CTCTAGAGTTATGGTCTTGCCGGTGAGAGTTTTTACAAAGATCTGCAT 154480 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | |||||| | || | ||| | || | |||||| ||||| ||||||| Sbjct 165851 CCACCGCGAAGACGGAGCACAAGATGGAGTGTGGACTCTTTCTGAATATTGTAATCAGCA 165910 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| ||||| || || || ||||| || | ||||| ||||||||||| Sbjct 165911 AGCGTACGCCCATCCTCCAACTGCTTCCCTGCAAATATCAGCCTCTGCTGATCAGGTGGA 165970 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || || || |||||||| ||||| ||| || ||| || | || || || ||| Sbjct 165971 ATCCCCTCCTTATCTTGAATTTTTGCTTTCACGTTATCAATTGTGTCCGAGCTCTCCACT 166030 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || || || ||||| || | ||||||||||| Sbjct 166031 TCCAGTGTTATGGTCTTCCCTGTCAATGTCTTCACGAATATCTGCAT 166077 Score = 102 bits (112), Expect = 2e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 192333 ATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTG 192392 ||| | ||| | ||| || ||| |||||||| | | || | | |||| || || || Sbjct 166102 ATGGAGAGTGGACTCCTTCTGGATGTTATAATCGGCGAGGGTCCTTCCATCCTCTAACTG 166161 Query 192393 TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452 || ||||||||||| | ||||| ||||||||||| || ||||| |||||||| || || Sbjct 166162 CTTCCCAGCAAAGATGAGCCTCTGCTGATCAGGTGGGATCCCTTCCTTATCTTGAATCTT 166221 Query 192453 ATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512 ||| || ||| || | ||| || ||| ||||| || || ||||| || || || Sbjct 166222 CGCTTTCACGTTATCAATCGTATCCGAGCTTTCAACTTCAAGGGTTATGGTCTTGCCGGT 166281 Query 192513 TAATGTTTTAATAAATATCTGCAT 192536 | || || | ||| |||||||| Sbjct 166282 AAGGGTCTTCACAAAGATCTGCAT 166305 Score = 93.3 bits (102), Expect = 8e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 |||||||| | ||| | ||||| ||||||||||| | | || | |||| || Sbjct 154728 ACTAAATGAAGAGTTGATTCTTTCTGAATATTATAATCTGCAAGCGTCCTGCCATCTTCG 154787 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 | |||||| || || ||||| | | |||||||||||| || || ||||| |||||||| Sbjct 154788 AGTTGTTTTCCGGCGAAGATCAGACGCTGTTGATCAGGAGGGATGCCTTCCTTATCTTGG 154847 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 || || |||||| ||| || | || || || || || ||||| ||||| || Sbjct 154848 ATCTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCGACCTCAAGAGTTATGGTCTTG 154907 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||||| | ||| || ||||| Sbjct 154908 CCGGTGAGGGTTTTGACAAAGATTTGCAT 154936 >seq25716 Length=1210045 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | || || | || || || | ||||| ||| || ||||| |||||| Sbjct 962332 ATGCCACCACGTAGTCGAAGAACCAAGTGAAGAGTAGACTCCTTCTGAATATTGTAATCA 962273 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| || |||| |||| ||||||||||||||||| | |||||||| || || Sbjct 962272 GCAAGTGTGCGGCCATCCTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGTTGGTCTGGC 962213 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||||||||| || ||| || ||||| || | || || ||| Sbjct 962212 GGGATACCCTCTTTATCTTGGATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTTTCC 962153 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || ||||| ||||||| ||| || | || |||||||| Sbjct 962152 ACCTCAAGGGTGATAGTTTTGCCAGTTAGTGTCTTTACGAAGATCTGCAT 962103 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | || || | || ||||| | |||| |||||| |||||||| ||| Sbjct 962560 ATGCCACCACGGAGGCGGAGCACCAAATGAAGGGTAGACTCTTTTTGAATATTATAGTCA 962501 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| || |||| || | || || ||||| || || | ||||| ||||||||| Sbjct 962500 GCAAGTGTACGACCATCCTCTAGCTGCTTGCCAGCGAATATCAGCCTCTGCTGATCAGGT 962441 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || || ||| || ||||| || | ||||| || Sbjct 962440 GGAATACCTTCTTTGTCCTGAATCTTAGCCTTGACATTGTCAATGGTGTCTGAACTCTCA 962381 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || || ||||| | ||||| | ||| || ||||| Sbjct 962380 ACCTCCAGTGTAATTGTCTTGCCAGTGAGGGTTTTCACAAAGATTTGCAT 962331 >seq25634 Length=602113 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||| || | || || || | |||| |||||| |||||||||||| Sbjct 348779 ATACCGCCACGAAGTCGGAGCACCAAGTGGAGTGTAGACTCTTTTTGAATATTATAATCA 348720 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || ||| |||| || | ||||| ||||||||||| || ||||| ||||| || Sbjct 348719 GCAAGAGTGCGTCCATCCTCGAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGATCTGGG 348660 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| ||||| ||| ||||| |||| ||||| || Sbjct 348659 GGAATACCCTCCTTGTCTTGAATTTTGGCTTTAACATTGTCAATAGTGTCTGAACTCTCA 348600 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || || || || ||||| | || || | ||| |||||||| Sbjct 348599 ACTTCCAAGGTGATAGTCTTGCCAGTAAGGGTCTTTACAAAGATCTGCAT 348550 >seq25319 Length=181645 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | ||||| | || | || || |||| ||| || ||| || ||||| | Sbjct 59947 CCACCACGGAGACGCAGGACAAGGTGCAATGTAGACTCCTTCTGGATGTTGTAATCTGCC 59888 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| |||| |||||||| || ||||||||||| | || || || || ||||| Sbjct 59887 AGGGTTCGGCCATCCTCCAATTGCTTCCCAGCAAAGATCAGCCTTTGCTGGTCCGGTGGA 59828 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || || || |||||| || ||||| || | |||||| || ||| Sbjct 59827 ATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATTGTCAATGGTATCTGAGCTCTCAACT 59768 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || ||||| ||||| | || || | |||||| ||||| Sbjct 59767 TCAAGAGTGATAGTTTTCCCAGTCAGAGTCTTGACAAATATTTGCAT 59721 Score = 104 bits (114), Expect = 5e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||||||||| || || | || || || | || | ||| ||| || || ||||| || Sbjct 58810 ATACCACCTCTGAGGCGAAGAACCAAGTGGAGGGTTGACTCCTTTTGA-ATGTTATAGTC 58752 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || || |||| || | ||||| ||||||||||| || || |||||||| || Sbjct 58751 AGCAAGAGTGCGACCATCTTCGAGCTGTTTTCCAGCAAAGATCAACCTTTGTTGATCTGG 58692 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || || || || ||||| || || ||| ||||| || | ||||| ||| Sbjct 58691 AGGGATCCCCTCCTTGTCTTGGATCTTTGCTTTCACATTGTCGATGGTGTCTGAGCTTTC 58632 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | ||||||| ||| || ||||| Sbjct 58631 CACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTAACAAAGATTTGCAT 58581 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| || || ||||| | || | || || ||| ||||| ||| Sbjct 59722 ATCCCACCACGGAGACGCAACACCAAATGAAGGGTTGATTCCTTCTGGATGTTATAGTCA 59663 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || | | |||| || | || || || ||||| || || || || ||||| ||| Sbjct 59662 GCCAAAGTCCTTCCATCTTCAAGCTGCTTTCCTGCAAAAATCAACCTTTGCTGATCCGGT 59603 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| || || |||||| || |||||| || | || || || Sbjct 59602 GGAATCCCCTCTTTGTCCTGAATTTTAGCCTTCACATTATCAATGGTGTCAGAGCTCTCA 59543 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||||||||||| ||||| | || |||| |||||||||||| Sbjct 59542 ACCTCCAAGGTAATGGTTTTCCCAGTAAGAGTCTTAACAAATATCTGCAT 59493 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||||||||| | || || || | || | ||| || || || || || Sbjct 59038 ATACCACCTCTAAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCC 58979 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| |||| ||||| ||||||||||| | ||||| || || || Sbjct 58978 GCGAGGGTACGGCCATCCTCCAGCTGTTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGG 58919 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || || ||||| || ||| ||||| || | ||||| || Sbjct 58918 GGGATTCCCTCCTTGTCCTGTATCTTGGCTTTAACATTGTCAATTGTGTCTGAGCTCTCA 58859 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| ||||| || || ||||| | || || | ||| |||||||| Sbjct 58858 ACCTCTAAGGTAATAGTCTTGCCAGTGAGAGTCTTCACAAAAATCTGCAT 58809 >seq25337 Length=191068 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| ||||||| || |||| |||| || | ||| || ||||| ||||| || | Sbjct 89113 GATATTGTAATCAGCCAAAGTTCTACCATCTTCAAGTTGCTTTCCAGCGAAGATCAAGCG 89054 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || |||||||| || |||||||| || || || || || ||||| || | Sbjct 89053 CTGCTGGTCAGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGT 88994 Query 192474 ATCTGAC-GAT-TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATC 192531 ||| || | | ||||| || ||||| || || || ||||||| ||||| | |||||| Sbjct 88993 ATC--ACTGCTCTCTACCTCGAGAGTTATTGTCTTCCCAGTTAGGGTTTTCACGAATATC 88936 Query 192532 TGCATTTT 192539 ||||| || Sbjct 88935 TGCATCTT 88928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984155034535050