Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq25310 127 4e-24 seq25716 116 7e-21 seq25706 113 8e-20 seq25634 100 5e-16 seq25337 93.3 8e-14 seq25319 86.0 1e-11 >seq25310 Length=177726 Score = 127 bits (140), Expect = 4e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | || || | |||| || | ||||| ||| || || |||||||| Sbjct 154935 ATACCGCCACGGAGACGGAGAACTAGGTGAAGAGTAGACTCCTTCTGGATGTTATAATCG 154994 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| || |||| || | ||| || || || || || || || |||||||||||| Sbjct 154995 GCCAAAGTACGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAACCTTTGTTGGTCAGGT 155054 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||||||| |||| || || || |||||| || ||||| || || Sbjct 155055 GGAATTCCTTCTTTACCTTGGATCTTGGCCTTGACATTATCGATGGTATCAGAACTCTCC 155114 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || |||||||| |||||||| ||||| ||||| | ||| |||||||| || Sbjct 155115 ACCTCGAGAGTAATAGTTTTACCGGTTAAGGTTTTGACGAAGATCTGCATATT 155167 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | || | ||| | || | |||||| |||||||||||| | Sbjct 154253 ACCACCGCGAAGACGGAGCACAAGATGGAGGGTGGACTCTTTCTGAATATTATAATCGGC 154312 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || ||| | || || || || || || ||||| || | ||||| || |||||||| Sbjct 154313 CAGAGTACGTCCATCCTCTAACTGCTTCCCTGCAAATATCAGCCTCTGCTGATCAGGTGG 154372 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || || |||||||| || || || |||||| || ||||| || ||| || Sbjct 154373 AATCCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATCGTATCAGAGCTTTCGAC 154432 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| ||||| || || || | ||||| | || |||||||| Sbjct 154433 CTCTAGAGTTATGGTCTTGCCGGTGAGAGTTTTTACAAAGATCTGCAT 154480 Score = 105 bits (116), Expect = 1e-17 Identities = 140/193 (73%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || |||||||| | |||| || |||| || | || || || || || || || || Sbjct 166580 ATGTTATAATCGGCCAAAGTACGGCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAACCTT 166639 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 |||||||||||||| || |||||||| ||||| || || || |||||| || ||| Sbjct 166640 TGTTGGTCAGGTGGGATCCCTTCTTTGTCTTGGATCTTGGCCTTCACATTATCGATGGTA 166699 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || || || |||||||| ||||| || ||||| ||||| | || |||||| Sbjct 166700 TCAGAGCTCTCCACCTCCAGAGTAATTGTTTTCCCGGTTAAAGTTTTGACAAAGATCTGC 166759 Query 172068 ATTTTATTATAAA 172080 || || || |||| Sbjct 166760 ATATT-TTTTAAA 166771 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| || | || | ||| | || | |||||| |||||| ||||| | Sbjct 165851 CCACCGCGAAGACGGAGCACAAGATGGAGTGTGGACTCTTTCTGAATATTGTAATCAGCA 165910 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | || | || ||||| || || || ||||| || | ||||| || |||||||| Sbjct 165911 AGCGTACGCCCATCCTCCAACTGCTTCCCTGCAAATATCAGCCTCTGCTGATCAGGTGGA 165970 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || || || |||||||| ||||| ||| || ||| || || || || || ||| Sbjct 165971 ATCCCCTCCTTATCTTGAATTTTTGCTTTCACGTTATCAATTGTGTCCGAGCTCTCCACT 166030 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||| || || || ||||| || | |||||||||||| Sbjct 166031 TCCAGTGTTATGGTCTTCCCTGTCAATGTCTTCACGAATATCTGCAT 166077 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || || || | ||| | |||||||| | ||| | ||||| ||||||||||||| Sbjct 154707 ATGCCTCCCCTCAATCGGAGAACTAAATGAAGAGTTGATTCTTTCTGAATATTATAATCT 154766 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | | | || || | |||||| || || || || | | |||||| ||||| Sbjct 154767 GCAAGCGTCCTGCCATCTTCGAGTTGTTTTCCGGCGAAGATCAGACGCTGTTGATCAGGA 154826 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || || |||||| ||| || || || || || Sbjct 154827 GGGATGCCTTCCTTATCTTGGATCTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCG 154886 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||| || || || | ||||| | || || ||||| Sbjct 154887 ACCTCAAGAGTTATGGTCTTGCCGGTGAGGGTTTTGACAAAGATTTGCAT 154936 >seq25716 Length=1210045 Score = 116 bits (128), Expect = 7e-21 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||||| | || || || | ||||| ||| || |||||| ||||| Sbjct 962332 ATGCCACCACGTAGTCGAAGAACCAAGTGAAGAGTAGACTCCTTCTGAATATTGTAATCA 962273 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || |||| |||||||||||||| || | ||||||||||| || Sbjct 962272 GCAAGTGTGCGGCCATCCTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGTTGGTCTGGC 962213 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||||||||| || ||| || ||||| || || || || ||| Sbjct 962212 GGGATACCCTCTTTATCTTGGATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTTTCC 962153 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTATAA 172079 || || || || || ||||| ||||||| ||| || | ||| |||||||| | | |||| Sbjct 962152 ACCTCAAGGGTGATAGTTTTGCCAGTTAGTGTCTTTACGAAGATCTGCATCTGTTGATAA 962093 Query 172080 AA 172081 || Sbjct 962092 AA 962091 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || |||||||||||||| | ||||| ||||||||||| || |||||||| || || || Sbjct 962932 TGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGTGGGATACCTTCTTTGTCCTGGATC 962873 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| || ||||| ||||| || || || || || || || || || |||||| Sbjct 962872 TTAGCCTTGACATTGTCAATAGTGTCAGAGCTCTCAACCTCCAGGGTGATTGTCTTACCA 962813 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | ||||| | || || ||||| Sbjct 962812 GTGAGAGTTTTCACAAAGATTTGCAT 962787 >seq25706 Length=1095516 Score = 113 bits (124), Expect = 8e-20 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || |||||| | || || || || | || | ||||| |||||| ||||||||||| Sbjct 698919 AAAACCACCGCGCAGACGCAAGACAAGGTGAAGAGTAGACTCTTTCTGGATATTATAATC 698978 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | || | | | | || || | ||| || ||||||||||| |||||||| || ||||| Sbjct 698979 AGCCAAGGTCCTTCCATCTTCAAGTTGCTTCCCAGCAAAAATCAATCTCTGCTGATCAGG 699038 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || ||||| ||||| || || ||| || |||||| |||||||| | | || Sbjct 699039 AGGAATCCCTTCCTTATCCTGAATCTTAGCCTTAACATTATCAATAGTATC--GCTACTC 699096 Query 172019 T--ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | || || | |||||| || || ||||| || || |||| || |||||||| Sbjct 699097 TCCACCTCCAAAGTAATAGTCTTTCCAGTCAAAGTCTTAACAAAAATCTGCAT 699149 Score = 98.7 bits (108), Expect = 2e-15 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||||||||| | |||| || | || || | ||||| |||||||| |||| || Sbjct 699424 ATATTATAATCAGCCAAAGTACGCCCATCTTCAAGCTGTTTTCCAGCAAAGATTAGCCTT 699483 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || || || || ||||||||||| || || || || || |||||| ||||| Sbjct 699484 TGCTGATCTGGGGGAATTCCTTCTTTGTCCTGAATCTTTGCCTTGACATTATCAATAGTG 699543 Query 172008 TCTGACGAT-TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || | | | || ||||| ||||||||||| || || || || ||||| | ||| ||||| Sbjct 699544 TC-GCTGCTCTCAACTTCAAGAGTAATGGTCTTTCCCGTCAAGGTTTTGACGAAGATCTG 699602 Query 172067 CAT 172069 ||| Sbjct 699603 CAT 699605 >seq25634 Length=602113 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || | ||| | || || || | ||| | || || || |||||||| Sbjct 348551 ATACCACCCCTTAATCGGAGCACCAAGTGGAGAGTTGATTCCTTTTGGATGTTATAATCA 348492 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| | || || | || || ||||||||||| | ||| || ||||| || Sbjct 348491 GCAAGGGTGCGTCCATCCTCAAGCTGCTTGCCAGCAAAAATCAGTCTTTGCTGGTCCGGG 348432 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || ||| ||||||||| ||||| ||||| |||| Sbjct 348431 GGAATACCCTCCTTGTCTTGAATCTTAGCTTTTACATTGTCAATAGTGTCTGAGCTTTCT 348372 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || || ||||||| ||||| | ||| || ||||| Sbjct 348371 ACCTCAAGGGTGATAGTCTTGCCAGTTAGGGTTTTCACGAAAATTTGCAT 348322 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | |||||| | || || || | |||| |||||| |||||||||||| Sbjct 348779 ATACCGCCACGAAGTCGGAGCACCAAGTGGAGTGTAGACTCTTTTTGAATATTATAATCA 348720 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || ||| | || || | ||||| |||||||| || || ||||| || || || Sbjct 348719 GCAAGAGTGCGTCCATCCTCGAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGATCTGGG 348660 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| ||||| ||| ||||| ||||| ||||| || Sbjct 348659 GGAATACCCTCCTTGTCTTGAATTTTGGCTTTAACATTGTCAATAGTGTCTGAACTCTCA 348600 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || || || || ||||| | || || | || |||||||| Sbjct 348599 ACTTCCAAGGTGATAGTCTTGCCAGTAAGGGTCTTTACAAAGATCTGCAT 348550 >seq25337 Length=191068 Score = 93.3 bits (102), Expect = 8e-14 Identities = 135/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| ||||| | |||| || | || || | ||| || ||||| || || || | | Sbjct 89112 ATATTGTAATCAGCCAAAGTTCTACCATCTTCAAGTTGCTTTCCAGCGAAGATCAAGCGC 89053 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||||||||| || |||||||| || || || || || ||||| || ||| Sbjct 89052 TGCTGGTCAGGTGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTA 88993 Query 172008 TCTGAC-GAT-TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCT 172065 || || | | ||||| || ||||| || || || ||||||| ||||| | |||||||| Sbjct 88992 TC--ACTGCTCTCTACCTCGAGAGTTATTGTCTTCCCAGTTAGGGTTTTCACGAATATCT 88935 Query 172066 GCATTTT 172072 |||| || Sbjct 88934 GCATCTT 88928 >seq25319 Length=181645 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || || || | || | ||| || ||| ||||| || Sbjct 58810 ATACCACCTCTGAGGCGAAGAACCAAGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCA 58751 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | || || | ||||| |||||||| || || || ||||| || || Sbjct 58750 GCAAGAGTGCGACCATCTTCGAGCTGTTTTCCAGCAAAGATCAACCTTTGTTGATCTGGA 58691 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || ||| ||||| || || ||||| ||| Sbjct 58690 GGGATCCCCTCCTTGTCTTGGATCTTTGCTTTCACATTGTCGATGGTGTCTGAGCTTTCC 58631 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || ||||| | ||||||| || || ||||| Sbjct 58630 ACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTAACAAAGATTTGCAT 58581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904844512265400