Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq25762 170 6e-37 seq25760 132 1e-25 seq25220 132 1e-25 seq25679 125 2e-23 seq24687 116 1e-20 seq25288 104 7e-17 seq25313 102 2e-16 >seq25762 Length=4693355 Score = 170 bits (188), Expect = 6e-37 Identities = 294/420 (70%), Gaps = 14/420 (3%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| || || | || |||| || ||||| |||||||||||| ||| Sbjct 4006680 AAAGCCATCCATTTCAGTCAACAACTGGTTAATGGTCTGTTCTCTTTCATCATTTCCACC 4006621 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAA 289056 | | || | ||||| | | | ||||||||||||||||| ||||| || Sbjct 4006620 ACC---AAGGCCTG-----CTCCTCTCTGCCTTCCAACAGCATCAATTTCATCAATAAAC 4006569 Query 289057 ATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCA 289116 | | || |||| ||| | | || | | || || ||||| || | || || ||| Sbjct 4006568 ACAATGCAAGGAGCCTTTGCTTTGGCTTTATCGAACAAATCTCTCACTCTCGAAGCCCCA 4006509 Query 289117 AGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGC 289175 | ||| ||| ||| || ||||| ||||| || | || ||| | |||| || ||| Sbjct 4006508 ACACCCACAAACAACTCAACAAACTCAGATGCTGC-ACATGAGAAAAATGGGACTCCTGC 4006450 Query 289176 TTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAG 289235 ||| || || ||||| || || | |||||||| ||||| ||||||||||| |||||| Sbjct 4006449 TTCTCCAGCAACTGCTCTAGCTAACAGTGTCTTCCCTGTACCAGGTGGTCCAACTAATA- 4006391 Query 289236 AACTCCCTTTGGTACTTTT-GCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATT 289294 ||| |||||| | | |||| || || || |||| || || ||| |||| ||||| | Sbjct 4006390 AACACCCTTTTGGAATTTTAGCTCCTAAAGCTGTATACTTATCTGGGTTCTTCAAAAAAT 4006331 Query 289295 CTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAA 289354 | |||| ||| | |||||| ||||||| | |||| |||||| ||||||||||| |||| Sbjct 4006330 CAACAACTTCTTGAAGTTCCAATTTTGCTTGATCAGCTCCTGCAACATCAGCAAATGTAA 4006271 >seq25760 Length=3792821 Score = 132 bits (146), Expect = 1e-25 Identities = 366/558 (66%), Gaps = 5/558 (1%) Strand=Plus/Minus Query 133081 TATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGATTTATT 133140 |||||||||||| | || || |||||| | ||||| |||||| ||| | ||| Sbjct 708484 TATGTTCCCAATCCAATACCCAGAAATTTGGGAAATGTACAAAAAAGCCGAAGCATCATT 708425 Query 133141 TTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTTACTGG 133200 |||||| || ||||| ||| | || |||| | ||||||||| |||| ||| Sbjct 708424 TTGGACGGCAGAGGAAGTGGATCTCTCTCAAGATCTCCGTCACTGGGAATCCCTAACTCC 708365 Query 133201 GGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGT 133260 |||||||| || || || ||| | | || || || || || || ||||| || Sbjct 708364 CGATGAAAAGCACTTCATCTCTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGTATCGT 708305 Query 133261 TCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTT 133320 |||||||| | | || |||||| ||| |||||| |||| || || ||||| || Sbjct 708304 CCTTGAAAACCTCGCCGGCCGTTTTATGAAAGAGGTTCAAGTGGCTGAGGCGCGTGCTTT 708245 Query 133321 TTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGA 133380 || || | || || || || || || ||||| ||| | || ||| | | | || Sbjct 708244 CTACGGTTTCCAAATCGCTATTGAGAACATCCACTCTGAAATGTACTCTCTTTTGTTGGA 708185 Query 133381 TACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATTAGCGA-ATTTC 133439 ||||| |||||||| || | ||| || | || |||| | | | || ||| Sbjct 708184 GACTTATATCAAAGACTCCAATGAAAAGAACCGTTTGTTTCACGCTA-TCGAGACGGTTC 708126 Query 133440 CTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTT 133499 |||| || |||||| | || |||||| | |||||||| | | | | | || Sbjct 708125 CTTGCATAGCGAAGAAAGCGGAGTGGGCTTTGAAATGGATAGACGGCTCG---GAATCTT 708069 Query 133500 TTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCT 133559 ||||| | | ||||||| ||| || || || ||||| ||| ||| |||| Sbjct 708068 TTGCTGAGAGGATTATTGCTTTCGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGTTTCT 708009 Query 133560 GCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAAC 133619 || | || |||||||||||||||||||| | | || || ||| ||||| ||||| Sbjct 708008 GCGCGATATTTTGGCTTAAAAAGCGTGGGTTAATGCCGGGTCTGACATTTTCAAACGAGT 707949 Query 133620 TTATTTCAAGGGACGAGG 133637 | || ||| | || |||| Sbjct 707948 TAATCTCACGAGATGAGG 707931 >seq25220 Length=137353 Score = 132 bits (146), Expect = 1e-25 Identities = 286/419 (68%), Gaps = 14/419 (3%) Strand=Plus/Minus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| |||||||| || | | ||||| | |||||||||||| ||||||||| | Sbjct 107287 TAAAACCATCCATTTCAGTAAGCAACTGATTTAATGTTTGTTCCCTCTCATCATTTCCTC 107228 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 | | ||| || | || ||| | | | ||||||||||||||||| || || |||| Sbjct 107227 CACC--AATG-CCTG--TCCCTC-TCTGCCTCCCAACAGCATCAATTTCATCGATAAAAA 107174 Query 289058 TCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAA 289117 || ||| || || ||| | || | ||||| || || || | || || || | Sbjct 107173 CCAAACATGGTGAGTTTACCTTTGCCTTGTTGAATAAATCCCTGACTCTTGAAGCCCCTA 107114 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATA-CTTGAATGAATGTTACATTTGCT 289176 ||| ||| |||| || | ||| || || | || | | ||| ||| | || |||| Sbjct 107113 CACCCACAAACATCTCAATAAACTCCGATCCTGAAAGCGAGAA-GAAAGGAACCCCTGCT 107055 Query 289177 TCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGA 289236 || || |||| |||| | || || | |||||| || || ||||| ||||| |||||||| Sbjct 107054 TCTCCAGCTATTGCCTTGGCAAGTAATGTCTTTCCAGTCCCAGGAGGTCCAACTAATAGA 106995 Query 289237 ACTCCCTTTGGTACTTTTGCCC---CAGCAGACTTATATTTCTCAGGGCTCTTTAAAAAT 289293 ||||| ||||| | | |||||| | ||||| | | ||||| || | || || || Sbjct 106994 ACTCCTTTTGGAATTCTTGCCCCTACTGCAGA---AAACTTCTCTGGTGTTTTCAAGAAG 106938 Query 289294 TCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || |||||||| | || || | || || |||||| || || |||||| |||| || Sbjct 106937 TCAACAATTTCTTGAAAGTCTTGCTTCGCTTCATCAACGCCAGCGACATCATCAAATGT 106879 >seq25679 Length=787315 Score = 125 bits (138), Expect = 2e-23 Identities = 317/469 (68%), Gaps = 16/469 (3%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCG---GTTTGCTT-AAATCC 288944 ||||| ||||| || |||||||| |||| ||||| ||| | ||| | | ||| || Sbjct 166696 ATATCTGCTCTATTAGTTGCTGC-AATA--ACAAT-GATACCAGTGTTACCCTCAAAACC 166751 Query 288945 ATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGA 289004 |||||| ||| || | || |||||||| ||||| |||||||||||| || | | Sbjct 166752 ATCCATTTCTGTCAATAGCTGGTTAAGTGTCTGTTCTCTTTCATCATTTCCCCCACC--A 166809 Query 289005 ATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064 || ||| | ||| || || ||||||||||||||||| || | || | | ||| Sbjct 166810 ATG--CCGGTGC-CTCTTTGCCTT-CCAACAGCATCAATTTCATCCACAAATACAATACA 166865 Query 289065 CGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAAC 289124 || | ||||| | | || || || | || | || | || || |||| |||||| Sbjct 166866 AGGTGCATTTTCTTTGGCCTTTTTGAAGAGATCACGGACTCTAGAGGCACCAACACCAAC 166925 Query 289125 ATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTG 289183 | |||| || ||||| |||||| | |||| | || | |||| || ||||| || | Sbjct 166926 AAACATCTCAACAAACTCAGAACCTGATA-TGGAGAAAAATGGAACGCCAGCTTCACCAG 166984 Query 289184 CTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCT 289243 | | |||| | || ||||| ||||| || ||||| ||||| || | | ||||| || | Sbjct 166985 CAATTGCCTTAGCTAGAAGAGTCTTCCCAGTTCCTGGTGGACCAACCAGAAGAACACCTT 167044 Query 289244 TTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTT 289303 | || | |||||| | | | || |||| || |||||| ||| || || | | Sbjct 167045 TGGGAATGCGAGCCCCAACTGCAGTGAATCTCTCTGGCTTCTTTAGAAACTCAACCACCT 167104 Query 289304 CCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || | || | ||||| |||||| ||| || |||||| |||| || Sbjct 167105 CCATGAAATCCTGCTTTGCTTCATCAACTCCAGCAACATCATCAAATGT 167153 >seq24687 Length=27406 Score = 116 bits (128), Expect = 1e-20 Identities = 158/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 156049 TACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||||||| || || ||||| ||||| || ||||| | |||||| || | || Sbjct 5038 TACCTTTCCTCTTGCCTCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTTA 5097 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 ||| |||| ||||||||| || || ||||| ||||| ||||||| || | | | Sbjct 5098 ACATTGGAACAATACCATTAGATGTCCCATTTGTTCCTCGAATATAGCTGCCTGTGGCAC 5157 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| ||| |||||| | ||||| || || | |||| || ||| || |||| Sbjct 5158 GAATATTGTGAATAGAGACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCT 5217 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||| ||||| |||| ||||||||| |||||||| ||| Sbjct 5218 TTAGAGTATCATAAATGCCTTCAATACTATCATCTTTCAT 5257 >seq25288 Length=167421 Score = 104 bits (114), Expect = 7e-17 Identities = 329/500 (66%), Gaps = 19/500 (4%) Strand=Plus/Plus Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911 |||||||| ||||| || || ||| |||||| ||||| | || ||||| | || Sbjct 137825 ATCAAACCGACCAGGTCGCAATAGAGCTTTGTCTAAGATATCAGGCCTATTTGTGCCAGC 137884 Query 288912 CAATACAACAAT---AGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAA--ATTTGA 288966 | |||||| | ||| ||| | |||||||||||| || | || | || Sbjct 137885 AAGTACAACTACTCCAGAGGTGGT---CCCAAATCCATCCAT--TTCTACAAGCAACTGG 137939 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttt 289026 ||||| || ||| | |||||||| ||| | |||| || | | |||| | Sbjct 137940 TTAAGGGTGCTTTCACGCTCATCATTGCCACC-CGAAAATCCTCC--ACGCCCCCTTGCT 137996 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 ||||| ||||| ||||| |||||||| | | || || | | |||||| || || Sbjct 137997 CGACCAATGGCATCTATTTCATCAATGAACACAATACTAGGTGCACATTGTCTTGC--TT 138054 Query 289087 GC--AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 | |||||| ||| || | ||||| || | |||||| ||||||| | || || | Sbjct 138055 CCTGAAATAAGCTTCTCACCCTGGATGGCCCGACTCCAACAAACATTTCCATGAAATCTG 138114 Query 289145 AAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 | | |||| |||| | ||| | ||| | ||| || || |||| | || |||||| Sbjct 138115 ACCCAGATA-TTGATAGGAAGGGCACACCAGATTCACCAGCAGTTGCCTTTGCAAGAAGT 138173 Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCA 289263 ||||| ||||| ||||| ||||| | | || | || ||||| | |||||| || Sbjct 138174 GTCTTCCCTGTGCCAGGAGGTCCTACCAGAAGGGCACCTTTTGGAATTTTTGCTCCCAAT 138233 Query 289264 GACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 || ||||||| || |||| | || | |||| ||| || ||| | |||||| Sbjct 138234 TCCTCGTATTTCTTTGGATTCTTGAGGAAGTGCACAAACTCCATAATTTCTTGTTTTGCT 138293 Query 289324 TCATCACATCCTGCTACATC 289343 |||||||| || || ||||| Sbjct 138294 TCATCACAGCCAGCAACATC 138313 >seq25313 Length=179564 Score = 102 bits (112), Expect = 2e-16 Identities = 224/329 (68%), Gaps = 10/329 (3%) Strand=Plus/Minus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 |||||| || ||| || || ||||| ||| | || || | ||| || || ||||| Sbjct 87520 ATCATATTTAACCATGATATCCTCCATGGCCTTCACTAGTCGTCTCTGGATGTACCCAGT 87461 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 || || || ||||| |||||||| ||||| | | ||||||||||||||| || || Sbjct 87460 CTCGGAAGTCTTCACAGCAGTATCAATAAGACCTTCCCTACCACCCATAGCATGAAAAAA 87401 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTC-GG 302731 | ||| | || | || | | | | ||| |||| || |||||||| || || Sbjct 87400 GAACTCCTGAGGAGTCAATCCACGTAGATATGAGTTCTCCACAAAACCACGACTTTCTGG 87341 Query 302732 GC--GAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC--TCATAGCCGTATGGG 302787 || |||| || |||||| ||||| ||||| || | | || | | | || ||||| Sbjct 87340 GCCATAATCATC---CTTGGTGAAGTGAGGCAGTGTTC-GATCAATGA-ACCCATATGGT 87286 Query 302788 ATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAA 302847 || ||||| || ||||| || || || |||| || | | ||||||| || || || | | Sbjct 87285 ATTCGCTTACCCTCAACATTTTGTTGCCCCACACAAGCAGTCATCTGTGATATGTTAATA 87226 Query 302848 TCACTGCCCTTGGAGCCAGCATTTACCAT 302876 ||| || || || || ||| | ||||| Sbjct 87225 AAACTCCCTTTTGATCCTGCAGTAACCAT 87197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471331770028131