Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq25310 89.7 4e-13 seq25319 87.8 1e-12 seq25706 86.0 5e-12 seq25716 82.4 6e-11 >seq25310 Length=177726 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || |||||||||||||||||||| ||||| ||||| | || |||| Sbjct 166764 AATATGCAGATCTTTGTCAAAACTTTAACCGGGAAAACAATTACTCTGGAGGTGGAGAGC 166705 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||||| ||| | || || ||||| ||||||||||| | || || Sbjct 166704 TCTGATACCATCGATAATGTGAAGGCCAAGATCCAAGACAAAGAAGGGATCCCACCTGAC 166645 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||||| | || | || || || ||||| || || | | | || |||| ||||| Sbjct 166644 CAACAAAGGTTGATCTTCGCCGGAAAGCAGCTCGAAGACGGCCGTACTTTGGCCGATTAT 166585 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| ||||| |||||||| | ||| |||| Sbjct 166584 AACATCCAAAAGGAATCTACTCTTCACCTGGT 166553 >seq25319 Length=181645 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||||||||||||||| ||| | || || ||||| || || | ||| ||| || | Sbjct 59721 ATGCAAATATTTGTCAAGACTCTGACTGGGAAAACTATCACTCTTGAAGTTGAGAGCTCA 59780 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | | || || || || ||||| ||||| | || ||| || Sbjct 59781 -GATACCATTGACAATGTGAAGGCTAAAATCCAGGACAAGGAAGGGATTCCACCGGACCA 59839 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||| || || | ||| || || || ||||||||| | |||| |||| |||||||| Sbjct 59840 GCAAAGGCTGATCTTTGCTGGGAAGCAATTGGAGGATGGCCGAACCCTGGCAGATTACAA 59899 Query 110452 CATTCAAAAAGAATCTACGTTGCAC 110476 ||| || || || ||||| |||||| Sbjct 59900 CATCCAGAAGGAGTCTACATTGCAC 59924 >seq25706 Length=1095516 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGA-----AACGGAGC 110327 |||||||| ||||| || || || || || || ||||||||| | || || | || Sbjct 699377 ATGCAAATTTTTGTTAAGACCTTGACGGGAAAGACCATTACCTTGGAGGTAGAAAGCAG- 699319 Query 110328 CTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGG 110387 |||| || ||| | || || ||||||| ||||||||||| | || | Sbjct 699318 -TGAC---ACAATCGATAATGTCAAGGCGAAGATTCAAGACAAAGAAGGGATTCCACCAG 699263 Query 110388 ATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATT 110447 |||| || || | |||| || || || ||||| || |||| || || |||| |||| Sbjct 699262 ATCAGCAGAGGTTGATTTTCGCAGGAAAGCAGCTTGAAGATGGAAGGACTTTGGCTGATT 699203 Query 110448 ACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 | |||||||| || ||||| || | ||| | |||||||| || || || || Sbjct 699202 ATAACATTCAGAAGGAATCAACACTTCACCTTGTGTTAAGGCTTCGTGGAGG 699151 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || |||||||| || || || || |||||||| | ||| ||| | Sbjct 699605 ATGCAGATCTTCGTCAAAACCTTGACGGGAAAGACCATTACTCTTGAAGTTGAGAGCAGC 699546 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | || || |||||| ||||||||||| | ||| ||||| Sbjct 699545 GACACTATTGATAATGTCAAGGCAAAGATTCAGGACAAAGAAGGAATTCCCCCAGATCAG 699486 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| || || | ||| || |||||||| || |||| | || |||| ||||| || Sbjct 699485 CAAAGGCTAATCTTTGCTGGAAAACAGCTTGAAGATGGGCGTACTTTGGCTGATTATAAT 699426 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || |||||||| || | ||| | ||| Sbjct 699425 ATCCAGAAAGAATCAACACTTCACCTTGTG 699396 >seq25716 Length=1210045 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| | || ||||| || || ||| | || ||| Sbjct 962559 ATGCAAATCTTTGTAAAAACCCTCACTGGCAAGACAATCACCCTGGAGGTTGAGAGCTCG 962618 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || |||||| ||||| ||||| | || || || Sbjct 962619 GATACCATAGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGGATACCACCAGACCAG 962678 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||||||||| ||||||||||||| | | || | || || ||||| Sbjct 962679 CAGAGGCTGATCTTTGCGGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCTGACTACAAT 962738 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || ||||| || |||||| ||||| Sbjct 962739 ATCCAGAAGGAATCCACTTTGCACTTGGTG 962768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412711973285159