Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq23215 307 2e-78 >seq23215 Length=2883 Score = 307 bits (340), Expect = 2e-78 Identities = 356/474 (75%), Gaps = 8/474 (2%) Strand=Plus/Minus Query 35433 TGGCGTCACGCTTTCGGACGGGTCACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCC 35492 || ||| | || || || ||||||| || ||||||||||||||| ||| ||| ||| Sbjct 2000 TGTCGTTATGCCTTTGGCAGGGTCACGCCGTGCTGGCCCTGGTATTTGCCGTTGCGGTCC 1941 Query 35493 TTGTACGAGATTTCGCAGTCCTCGTCACTCTCGAAAAACAGCATCTGCGCCACACCTTCG 35552 ||||| || | |||||| |||| || || ||||||||||||| |||||| || ||| Sbjct 1940 TTGTAGGACACGTCGCAGACCTCATCGCTTTCGAAAAACAGCACCTGCGCGCAGCCCTCG 1881 Query 35553 TTCGCGTACACACGCGCCGGCAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCT 35612 || || | |||||||| || |||||| ||||||||| ||||||| ||| Sbjct 1880 CCGGCATAGATCTTGGCCGGCAGCGGCGTGGTGTTGGAGAACTCCAGCGTCACATAGCCT 1821 Query 35613 TCCCACTCAGGTTCCAGCGGCGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTC 35672 |||||||| ||||| | ||||||||||||||||||||| || |||||||||||||| | Sbjct 1820 TCCCACTCCGGTTCGAACGGCGTCACGTTGACGATGATGCCGCAGCGCGCGTAGGTCGAC 1761 Query 35673 TTACCCAAACACACCACGAGGACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCC 35732 || |||| || ||| || ||| |||||||||||||||||||||| | ||||| ||| Sbjct 1760 TTGCCCAGGCAGACCGTCAGCACGCTGCGCGGAATGCGGAAGTATTCCATGGTGCGGGCC 1701 Query 35733 AGAGCGAAGCTGTTCGGCGGAATCAGGATGCTGTCAGCCTTAACCGGCTGCAGGCAC--- 35789 || ||||| ||||||||| || | | | ||| || || || | || | || Sbjct 1700 AGCGCGAACGAGTTCGGCGGGATGATGCAGACGTC-GCTTTTCACG--TCCACGAACGAG 1644 Query 35790 TTGGGATCGAAGTTCTTCGGATCAACCACTGCGCTGTTGATGTTGGTGAAGACTTCCCAC 35849 |||| ||||||||||||||||| || | | ||||||||||||||||||||| | || Sbjct 1643 TTGGAGTCGAAGTTCTTCGGATCGACGATGGTGCTGTTGATGTTGGTGAAGACCTTGAAC 1584 Query 35850 TCATCGGCAGCA-CGCACGTCATAACCATACGACGAGTTGCCGTACGAGATAAC 35902 |||||||| ||| || | ||| || || || |||||| |||| || || || || Sbjct 1583 TCATCGGC-GCAGCGGATGTCGTAGCCGTAGGACGAGGTGCCATATGAAATCAC 1531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825650823818520