Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq25760 132 8e-25 >seq25760 Length=3792821 Score = 132 bits (146), Expect = 8e-25 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | ||||| ||||| ||||| || |||||||| ||||| ||| ||||| ||| Sbjct 708254 GCCTCAGCCACTTGAACCTCTTTCATAAAACGGCCGGCGAGGTTTTCAAGGACGATACCG 708313 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||| |||||||||||||| ||| ||||| || ||| | || Sbjct 708314 TCGGAGGCGGCGAAGAAGGCGAGGACGTGAGAGATGAAGTGCTTTTCATCGGGAGTTAGG 708373 Query 796270 GAGACCCAGTGGACCGTG-TCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 || |||||| ||| | | || ||| || || ||||| || |||||||| || || Sbjct 708374 GATTCCCAGT-GACGGAGATCTTGAGAGAGATCCACTTCCTCTGCCGTCCAAAATGATGC 708432 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 ||||| ||||||||||| ||||| || | |||| |||| ||||||| Sbjct 708433 TTCGGCTTTTTTGTACATTTCCCAAATTTCTGGGTATTGGATTGGGAACA 708482 Score = 107 bits (118), Expect = 3e-17 Identities = 199/291 (68%), Gaps = 7/291 (2%) Strand=Plus/Plus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 || || ||||| | || ||||| || |||||||| || || |||||||| || ||||| Sbjct 707966 AGACCCGGCATTAACCCACGCTTTTTAAGCCAAAATATCGCGCAGAAACTTCCAGAGAAG 708025 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496 || || || || || || || | | | || ||| ||||||| ||| ||| ||| Sbjct 708026 AAAATCCCTTCAACACAAGCGAAAGCAATAATCCTCTCAGCAAAAGATTCCGAGCCGTCT 708085 Query 794497 TTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556 ||||| |||| |||||||| || || ||| | | || ||||| ||||| Sbjct 708086 ------ATCCATTTCAAAGCCCACTCCGCTTTCTTCGCTATGCAAGGAACCGTCTCGATA 708139 Query 794557 GCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAG 794616 ||| |||| | ||| ||| || | ||| |||| || || || | | || ||| Sbjct 708140 GCGTGAAACAAACGGTTCTTTTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGAGAG 708199 Query 794617 TAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATA-AAAGCA 794666 || | || ||||||||||| || || ||||| ||||| || || |||||| Sbjct 708200 TACATTTCAGAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAGAAAGCA 708250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913505872184957