Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq18173 197 4e-46 seq21999 170 5e-38 seq7359 113 1e-20 seq13064 87.8 5e-13 >seq18173 Length=1378 Score = 197 bits (218), Expect = 4e-46 Identities = 294/415 (71%), Gaps = 4/415 (1%) Strand=Plus/Minus Query 18665 CGCTTACTGTTATAAAACATTTCGATGTAATCAAAAATATCACCGCGAGCTTCTTCTCG- 18723 ||||| ||| ||||| | || |||||||| || ||||| | ||||| || || Sbjct 567 CGCTTTGAGTTGTAAAAGAACTCTATGTAATCGAAGATATCCCTCTTTGCTTCATCCCGG 508 Query 18724 -CGTTCCGTAGATCTTTTTCTTTATCCGTTCACGTTTCAGTAGCTGGAAAAAACTTTCTG 18782 |||| ||| || || || ||| || || || ||||| || || || || || | Sbjct 507 TCGTT--GTATATTTTACGTTTAATCTTCTCCCGCTTTAGTAGTTGAAAGAAGCTCTCAG 450 Query 18783 CGACTGCGTTGTCATGACAGTTACCGCGACGGCTCATACTGCCCTCCAGCCCGTGTGATT 18842 | || || || ||||| |||||||| | |||||||| ||| ||| || |||| || Sbjct 449 CCACAGCATTATCATGGCAGTTACCTCTGCGGCTCATGCTGGACTCAAGGTTATGTGCTT 390 Query 18843 TCAGGAACGACTGCCACTCATAGCTTGTGTACTGACTGCCTTGATCAGAATGAACCAGCA 18902 | || ||| | ||| || | || |||||||| || || ||||| ||||||| ||||| Sbjct 389 TTAGAAACAGCATCCAATCTTCACTGGTGTACTGGCTACCCTGATCCGAATGAATCAGCA 330 Query 18903 CCTGCTTTTGAGGATTACGTCGCCACACGGCCATCAGAAGTGCATTCAGGACAATATCCT 18962 ||| | || ||| || | |||||||| ||||| || | ||||| || || | || | Sbjct 329 CCTTTTGTTTAGGCTTTCTGCGCCACACAGCCATTAGCAATGCATCCAATACCAACTCTT 270 Query 18963 TTGTCATCCGGGGCTGCATTGACCAGCCAATAACTTTGCGCGAGAACAGGTCAACAACCA 19022 | || || || | |||||| |||||||| | || ||| ||||| | ||| | ||| Sbjct 269 TGGTTATACGCGACTGCATAGACCAGCCTACAATCCGGCGGGAGAATAAGTCCATTACCG 210 Query 19023 CAGCCAGATACAGCCAGCCTTCGTGAGTCCGGATGTAGGTGATGTCCGTTACCCA 19077 | ||||||||||||||||| || || || ||||| || || |||||||| ||||| Sbjct 209 CTGCCAGATACAGCCAGCCCTCATGTGTGCGGATATATGTAATGTCCGTGACCCA 155 >seq21999 Length=1896 Score = 170 bits (188), Expect = 5e-38 Identities = 295/424 (70%), Gaps = 6/424 (1%) Strand=Plus/Minus Query 18671 CTGTTATAAAACATTTCGATGTAATCAAAAATATCACCGCGAGCTTCTTCTCGCGTTCCG 18730 ||||||||||||| || || ||||||||||||||| |||| |||| |||| || Sbjct 765 CTGTTATAAAACACCTCAATATAATCAAAAATATCAGCGCGTGCTTTATCTCTCGAATGA 706 Query 18731 TAGATCTTTTTCTTTATCCGTTCACGTTTCAGTAGCTGG--AAAAAACTTTCTGCGACTG 18788 || | | || || | ||| ||| | | ||| |||||| ||| || |||| Sbjct 705 TACACATGATTGCGGATTCTTTCCTTTTTTA--AACTGCTAAAAAAAGATTCAGCCACTG 648 Query 18789 CGTTGTCATGACAGTTACCGCGACGGCTCATACTGCCCTCCAGCCCGTGT-GATTTCAGG 18847 | ||||| | ||||||||| | || ||||| || ||| || ||| | | || Sbjct 647 CATTGTCGTAACAGTTACCTCTGCGACTCATGCTTGCCTGAAGTTGATGTTGCTCACAAA 588 Query 18848 AACGACTGCCACTCATAGCTTGTGTACTGACTGCCTTGATCAGAATGAACCAGCACCTGC 18907 | || || ||| || | || | || || ||||| |||||||||| | || || Sbjct 587 ATCG-CTTCCATTCGTCACTGCTATATTGTGATCCTTGGTCAGAATGAATAATGACAGGC 529 Query 18908 TTTTGAGGATTACGTCGCCACACGGCCATCAGAAGTGCATTCAGGACAATATCCTTTGTC 18967 || || ||||| ||||| || ||||| | || |||| || || || ||||| | | Sbjct 528 TTAGTTGGTTTACGACGCCATACCGCCATTAAAATCGCATCCAACACGATTTCCTTAGCC 469 Query 18968 ATCCGGGGCTGCATTGACCAGCCAATAACTTTGCGCGAGAACAGGTCAACAACCACAGCC 19027 | | | ||||||||| ||||| || ||||| ||||||||||| | ||||||||| Sbjct 468 AATGTTGATTTCATTGACCAACCAATCACCTTGCGAGAGAACAGGTCTAAGACCACAGCC 409 Query 19028 AGATACAGCCAGCCTTCGTGAGTCCGGATGTAGGTGATGTCCGTTACCCAACGCTCATCC 19087 | ||| |||||||| | | |||||||||| ||||| ||||| || |||||| |||||| Sbjct 408 AAATAGAGCCAGCCCTGGAGAGTCCGGATATAGGTAATGTCTGTCACCCAAGCCTCATCA 349 Query 19088 GGTG 19091 |||| Sbjct 348 GGTG 345 >seq7359 Length=976 Score = 113 bits (124), Expect = 1e-20 Identities = 246/364 (68%), Gaps = 6/364 (2%) Strand=Plus/Plus Query 18671 CTGTTATAAAACATTTCGATGTAATCAAAAATATCACCGCGAGCTTCTTCTCGCGTTCCG 18730 ||||||||||||| || || ||||||||||||||| |||| |||| |||| || Sbjct 616 CTGTTATAAAACACCTCAATATAATCAAAAATATCAGCGCGTGCTTTATCTCTCGAATGA 675 Query 18731 TAGATCTTTTTCTTTATCCGTTCACGTTTCAGTAGCTGG--AAAAAACTTTCTGCGACTG 18788 || | | || || | ||| ||| | | ||| |||||| ||| || |||| Sbjct 676 TACACATGATTGCGGATTCTTTCCTTTTTTA--AACTGCTAAAAAAAGATTCAGCCACTG 733 Query 18789 CGTTGTCATGACAGTTACCGCGACGGCTCATACTGCCCTCCAGCCCGTGT-GATTTCAGG 18847 | ||||| | ||||||||| | || ||||| || ||| || ||| | | || Sbjct 734 CATTGTCGTAACAGTTACCTCTGCGACTCATGCTTGCCTGAAGTTGATGTTGCTCACAAA 793 Query 18848 AACGACTGCCACTCATAGCTTGTGTACTGACTGCCTTGATCAGAATGAACCAGCACCTGC 18907 | || || ||| || | || | || || ||||| |||||||||| | || || Sbjct 794 ATCG-CTTCCATTCGTCACTGCTATATTGTGATCCTTGGTCAGAATGAATAATGACAGGC 852 Query 18908 TTTTGAGGATTACGTCGCCACACGGCCATCAGAAGTGCATTCAGGACAATATCCTTTGTC 18967 || || ||||| ||||| || ||||| | || |||| || || || ||||| | | Sbjct 853 TTAGTTGGTTTACGACGCCATACCGCCATTAAAATCGCATCCAACACGATTTCCTTAGCC 912 Query 18968 ATCCGGGGCTGCATTGACCAGCCAATAACTTTGCGCGAGAACAGGTCAACAACCACAGCC 19027 | | | ||||||||| ||||| || ||||| ||||||||||| | ||||||||| Sbjct 913 AATGTTGATTTCATTGACCAACCAATCACCTTGCGAGAGAACAGGTCTAAGACCACAGCC 972 Query 19028 AGAT 19031 | || Sbjct 973 AAAT 976 >seq13064 Length=1101 Score = 87.8 bits (96), Expect = 5e-13 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 18746 ATCCGTTCACGTTTCAGTAGCTGGAAAAAACTTTCTGCGACTGCGTTGTCATGACAGTTA 18805 || || || || |||||||||||||| |||||||| ||||||||||| || |||||||| Sbjct 48 ATTCGCTCTCGCTTCAGTAGCTGGAAGAAACTTTCCGCGACTGCGTTATCGTGACAGTTG 107 Query 18806 CCGCGACGGCTCATACTGCCCTCCAG 18831 ||||| |||||| ||| || |||| Sbjct 108 CCGCGGCGGCTCTGGCTGGCCACCAG 133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127065114358320