Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_022915.1 Length=40471 Score E Sequences producing significant alignments: (Bits) Value seq23596 116 1e-21 >seq23596 Length=4023 Score = 116 bits (128), Expect = 1e-21 Identities = 379/578 (66%), Gaps = 8/578 (1%) Strand=Plus/Minus Query 2671 CGCGTGCACAAATGGATCCACGATGGCGCGCGAGTGCTGGAGGACTGCGGATTCATCGCC 2730 ||||||| ||||| ||| ||| || | | || ||| | |||||| || ||||||| Sbjct 3970 CGCGTGCGCAAATACTTCCTCGACGGATCTGGCGTCCTGAAAGACTGCAAATACATCGCC 3911 Query 2731 GGT-CCGAACATTCCGATCGTGC-CGTTCTATGGCAAGCGCGCCTACATTGACAACCAGG 2788 ||| ||||| || ||||||||| ||| || |||| || ||| ||| | | Sbjct 3910 GGTACCGAA-ATACCGATCGTGGTCGTGCTG-GGCATCCGACAGATCATCGACGGCATCG 3853 Query 2789 AACGGAT-CATGTCGCACATCCGTCTGGGAAAAGACGCGCAGCGCCTGTTCAACATGCAG 2847 |||| | || | ||| | | || || | |||||| |||||||||| | |||||||||| Sbjct 3852 AACGCTTTCAGGGCGC-CGTACGGCTCGCGAAAGACTCGCAGCGCCTCTACAACATGCAG 3794 Query 2848 ATTTCGCTGCTGGCGATCATCGCGGCATTGTCGCCGCGGCGCAAACCGATATTCACGCCC 2907 || ||| || |||| ||||||| |||| || || || || ||||||||| Sbjct 3793 ATCAGCACGCTTGCTGACATCACGGCATTCACGCCTCGCGAGAAGCCTATTTTCACGCCC 3734 Query 2908 GGGCAGATGGCAGGCCATGGCACGACCTGGGCTAACGACAACATCGATGACAATCCCTAT 2967 | ||||||||| || |||| | | ||||| ||| |||| ||||||| || Sbjct 3733 GAGCAGATGGCCGGGCATGAATTGTCATGGGCGCGCGATCTGGTCGACAACAATCCGTAC 3674 Query 2968 CTGCTGATCAACGCCATCGAGAACCCTGATGGCAGCG-CAACACCGGCCGGCCCGGTGGG 3026 ||||| ||||| | || | | || || | || || | ||| |||||||| || Sbjct 3673 CTGCTTATCAATCCGGTCACAGGCGCCGACGG-ATCGAGCACGCTGGCGGGCCCGGTTGG 3615 Query 3027 TTACTGCGAGCCGCCCAATGTTCCGGAGCCTCTCGCGGCCCTCATCCAGATCACCGACGC 3086 ||| | ||| |||| | || ||| | ||||| | ||| ||||||||||| | || Sbjct 3614 CTACATCAAGCAGCCCGACGTGCCGCCCGCGCTCGCTGGCCTGATCCAGATCACGGCTGC 3555 Query 3087 CAGCATCAAGGAGCTGACGGGCAACCAGGAGGCCGGCGAGCAGGTCGTCTCGAACATCTC 3146 | ||| | ||| | || ||| | | ||| | || |||| ||| | |||| || Sbjct 3554 CGACATGATGGACGTTACTGGCGGCGATCTGGCAGCCGGTGAGGTGGTCGCCAACACATC 3495 Query 3147 CGATGCGCTGATGGAGCGGGTGCAAGCCAAGGTCGACATGCTGTCGTTCATCTACATGGA 3206 || || ||| | || ||||| || | ||||||| | | ||||| || || Sbjct 3494 GGACGCACTGGTCAGCCGCGTGCAGGCACATCAGGACATGCAGGTCTACATCTTCACCGA 3435 Query 3207 CAATATGGCGAAGTCGATGCAACGCTCCGGCGAAATCT 3244 | ||| | ||||||| || | ||| || |||| Sbjct 3434 CGGCATGAAGCGCGCGATGCAGCGTTGCGGTGAGATCT 3397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129346016335598