Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq25319 102 6e-17 seq25744 91.5 1e-13 seq25716 89.7 4e-13 seq25634 82.4 6e-11 >seq25319 Length=181645 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||||||||| || || | || ||||| || |||||| | ||| ||| ||| | Sbjct 59037 ATGCAAATTTTTGTGAAGACCCTCACTGGCAAGACTATTACCTTGGAAGTTGAGAGCTCG 59096 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | | || || |||||| || || ||||| | ||| || || Sbjct 59097 -GACACTATTGACAATGTTAAGGCCAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCA 59155 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || |||||||||||||| | | || | || |||||||| Sbjct 59156 GCAGAGGCTCATCTTTGCTGGCAAACAGCTGGAGGATGGCCGTACCCTCGCCGACTACAA 59215 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||| |||||||| || | ||| |||| Sbjct 59216 CATTCAGAAGGAGTCCACCCTTCACTTGGT 59245 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || ||| | || ||||| || |||||| | || ||| ||| Sbjct 58809 ATGCAGATTTTTGTGAAGACTCTCACTGGCAAGACTATTACCTTAGAGGTTGAGAGCTCA 58868 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || ||| ||||| || || || || | ||| || || Sbjct 58869 -GACACAATTGACAATGTTAAAGCCAAGATACAGGACAAGGAGGGAATCCCCCCAGACCA 58927 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || |||||||||||||| | | || | ||||||||||| Sbjct 58928 GCAGAGGCTCATCTTTGCTGGCAAACAGCTGGAGGATGGCCGTACCCTCGCGGACTACAA 58987 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||| |||||||| || | ||| |||| Sbjct 58988 CATTCAGAAGGAGTCCACCCTTCACTTGGT 59017 >seq25744 Length=1702523 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || || || ||||| |||| || || ||||| ||| | || || | Sbjct 948065 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATAACCCTAGAGGTTGAATCC 948124 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 |||||| ||| | | || || ||||| || || |||||| | || ||| Sbjct 948125 TCCGATACCATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCGGAC 948184 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 ||||| | || || | || || || || || || |||| | ||| | ||||||||| Sbjct 948185 CAGCAACGGCTAATCTTCGCAGGAAAGCAACTCGAAGACGGCCGTACACTTGCGGACTAC 948244 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || ||||||||||| ||||| ||||| || ||||| |||| || Sbjct 948245 AACATCCAGAAGGAGTCTACTTTGCATCTGGTGCTGCGATTGAGAGGAGG 948294 >seq25716 Length=1210045 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| ||||| | || ||||| || || ||| | || ||| ||| | Sbjct 962559 ATGCAAATCTTTGTAAAAACCCTCACTGGCAAGACAATCACCCTGGAGGTTGAGAGCTCG 962618 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || |||||| || || ||||| | || || || Sbjct 962619 -GATACCATAGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGGATACCACCAGACCA 962677 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||||||||| ||||||||||| | | || | || |||||||| Sbjct 962678 GCAGAGGCTGATCTTTGCGGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCTGACTACAA 962737 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||| || || |||||| ||||| Sbjct 962738 TATCCAGAAGGAATCCACTTTGCACTTGGTG 962768 >seq25634 Length=602113 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| || || | || ||||| || ||||| | || |||| | Sbjct 348778 ATGCAAATCTTTGTGAAGACCCTCACCGGCAAGACTATTACTTTGGAGGTGGAGAGTTCT 348837 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || ||||| || || ||||| | || |||||| Sbjct 348838 GATACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATCAG 348897 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | ||| ||||| ||||| ||||| | |||| | || ||||| ||| Sbjct 348898 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGATGGGCGAACACTTGCCGACTATAAC 348957 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| ||||| || || | ||| ||||| Sbjct 348958 ATTCAGAAGGAATCCACCCTCCACTTGGTG 348987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398751558044707