Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq25310 114 2e-20 seq25706 104 4e-17 >seq25310 Length=177726 Score = 114 bits (126), Expect = 2e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || || || || || ||| |||| || || || Sbjct 154935 TGCAAATCTTTGTCAAAACCCTCACCGGCAAGACCATAACTCTTGAGGTCGAGAGCTCCG 154876 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | || |||||| || || ||| ||| |||||||| || || ||||||| Sbjct 154875 ACACAATTGATAACGTAAAAGCCAAGATCCAAGATAAGGAAGGCATCCCTCCTGATCAAC 154816 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || || || || || |||||| | || ||| || ||| | |||||||||||| Sbjct 154815 AGCGTCTGATCTTCGCCGGAAAACAACTCGAAGATGGCAGGACGCTTGCAGATTATAATA 154756 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || |||||||| ||| | |||||||| | ||||| || ||||| Sbjct 154755 TTCAGAAAGAATCAACTCTTCATTTAGTTCTCCGATTGAGGGGAGG 154710 >seq25706 Length=1095516 Score = 104 bits (114), Expect = 4e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || || || ||||| || |||||| | || || || || || Sbjct 699148 TGCAGATTTTTGTTAAGACTTTGACTGGAAAGACTATTACTTTGGAGGTGGAGAGTAGCG 699089 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| || ||| || || ||| ||||| ||||| || ||||| | Sbjct 699088 ATACTATTGATAATGTTAAGGCTAAGATTCAGGATAAGGAAGGGATTCCTCCTGATCAGC 699029 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | |||||||| || || ||| | || ||| || || || | |||||||||| Sbjct 699028 AGAGATTGATTTTTGCTGGGAAGCAACTTGAAGATGGAAGGACCTTGGCTGATTATAATA 698969 Query 146212 TACAAAAAGAATCGACT 146228 | || ||||| || ||| Sbjct 698968 TCCAGAAAGAGTCTACT 698952 Score = 102 bits (112), Expect = 1e-16 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| || || ||||| || |||||| |||| || || | || Sbjct 699604 TGCAGATCTTCGTCAAAACCTTGACGGGAAAGACCATTACTCTTGAAGTTGAGAGCAGCG 699545 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | ||||| || || || || |||||||| ||||| || ||||| | Sbjct 699544 ACACTATTGATAATGTCAAGGCAAAGATTCAGGACAAAGAAGGAATTCCCCCAGATCAGC 699485 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| || || ||||| || ||||| | || ||| | || || | |||||||||| Sbjct 699484 AAAGGCTAATCTTTGCTGGAAAACAGCTTGAAGATGGGCGTACTTTGGCTGATTATAATA 699425 Query 146212 TACAAAAAGAATCGAC 146227 | || |||||||| || Sbjct 699424 TCCAGAAAGAATCAAC 699409 Score = 86.0 bits (94), Expect = 1e-11 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| | |||||||| || || ||| | || || || | || Sbjct 699832 TGCAGATTTTCGTGAAAACCCTCACAGGAAAGACCATCACTCTGGAGGTGGAGAGCAGCG 699773 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | || || ||| ||||| ||| || ||||| || ||||| || || | Sbjct 699772 ACACAATAGACAACGTGAAAGCCAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAGC 699713 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| || ||||| ||||| | || || | || ||| | |||||||| | Sbjct 699712 AACGTCTCATCTTCGCAGGAAAACAGCTCGAAGACGGCCGCACCTTAGCCGATTATAACA 699653 Query 146212 TACAAAAAGAATCGACTATCCA 146233 | ||||||||||| || |||| Sbjct 699652 TTCAAAAAGAATCAACCCTCCA 699631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785913224937960