Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq25763 89.7 2e-13 seq25747 89.7 2e-13 seq25707 80.6 1e-10 >seq25763 Length=163161 Score = 89.7 bits (98), Expect = 2e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| ||||||||||||||| | | || ||| ||||||||| |||||||||| | Sbjct 41023 GTTGCGGAGACGGGATTTGAACCCGTGACTTCAAGGTTATGAGCCTTGCGAGCTACCAAG 41082 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 41083 CTGCTCTACCCCGC 41096 >seq25747 Length=1772015 Score = 89.7 bits (98), Expect = 2e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| ||||||||||||||| | | || ||| ||||||||| |||||||||| | Sbjct 106359 GTTGCGGAGACGGGATTTGAACCCGTGACTTCAAGGTTATGAGCCTTGCGAGCTACCAAG 106418 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 106419 CTGCTCTACCCCGC 106432 >seq25707 Length=1105073 Score = 80.6 bits (88), Expect = 1e-10 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 50110 GTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAA 50169 ||||||||| ||||||||||||||| | | || ||| ||||||||| |||||| || | Sbjct 294939 GTTGCGGAGACGGGATTTGAACCCGTGACTTCAAGGTTATGAGCCTTCCGAGCTGCCAAG 294998 Query 50170 CTGCTCTACTCCGC 50183 ||||||||| |||| Sbjct 294999 CTGCTCTACCCCGC 295012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181547641111506