Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq25760 111 4e-19 seq25313 109 1e-18 seq24687 86.0 1e-11 >seq25760 Length=3792821 Score = 111 bits (122), Expect = 4e-19 Identities = 136/185 (74%), Gaps = 3/185 (2%) Strand=Plus/Minus Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGA 131860 |||||||| || |||||| | |||||||| ||| | || | |||| || || Sbjct 708114 AAGAAAGCGGAGTGGGCTTTGAAATGGAT---AGACGGCTCGGAATCTTTTGCTGAGAGG 708058 Query 131861 CTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTT 131920 || | ||||| |||||||||||||| || ||||| || || |||||| || || ||| Sbjct 708057 ATTATTGCTTTCGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGTTTCTGCGCGATATTT 707998 Query 131921 TGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGA 131980 |||||||| |||||||| || ||||| || || |||| || || | || ||||| || Sbjct 707997 TGGCTTAAAAAGCGTGGGTTAATGCCGGGTCTGACATTTTCAAACGAGTTAATCTCACGA 707938 Query 131981 GATGA 131985 ||||| Sbjct 707937 GATGA 707933 >seq25313 Length=179564 Score = 109 bits (120), Expect = 1e-18 Identities = 140/188 (74%), Gaps = 10/188 (5%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || ||||||||||| ||| | || || |||||| | |||||| || ||||||||| Sbjct 85870 AGGCATTTGAATGATGGTGACTTCGTGCTCTTCAATCGTCAACCAAGTCTCCATAAAATG 85929 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTAT--CTGGATTGACATTTCGATTAAATGTAA 305423 ||||| |||| |||| | ||||| ||||| | | ||||| || ||||| | Sbjct 85930 TCTATTATGGGGCATAGAATCAAA--ATTATGCCATACTCAACATTCCGTTTAAACTT-- 85985 Query 305424 GTGCTTGTACGCCT---TATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTAC 305480 || || |||| || || ||||| ||||||||||| ||||||||||| |||||||| | Sbjct 85986 GT-CTGTTACGTCTCCATACAATGCTGATTTTGATGGTGATGAAATGAACATGCATGTTC 86044 Query 305481 CTCAATCA 305488 |||||||| Sbjct 86045 CTCAATCA 86052 >seq24687 Length=27406 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 110538 ATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCT 110597 || || |||||| ||||||||| ||||||||| |||| || || |||| |||| Sbjct 5257 ATGAAAGATGATAGTATTGAAGGCATTTATGATACTCTAAAGGAGTGTGCTGTTATCAGC 5198 Query 110598 AAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGG-AGCAAATAT 110656 ||| |||||||||||||| | |||| ||||||| | | ||| ||| |||| Sbjct 5197 AAATCAGCTGGAGGAATTGGTGTCTCTATTCACAATATTCGTGCCACAGGCAGC-TATAT 5139 Query 110657 CGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACAC 110716 | | | || || | || | ||| |||||||||||||||| || ||||| || || Sbjct 5138 TCGAGGAACAAATGGGACATCTAATGGTATTGTTCCAATGTTAAGGGTGTTCAATGATAC 5079 Query 110717 TGCAAAATATGTGAATCAAGGTGG 110740 ||| ||||| ||||||| || Sbjct 5078 TGCCCGCTATGTTGATCAAGGAGG 5055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186421046817243