Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq25573 104 2e-17 seq25634 102 5e-17 seq25716 98.7 7e-16 seq25744 93.3 3e-14 >seq25573 Length=429841 Score = 104 bits (114), Expect = 2e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || ||||| |||||||| |||| ||| ||||| |||| || | || |||||||| || Sbjct 359437 TCCTTTTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAG 359496 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || ||||| || || || | || | |||||| ||||| ||||| |||| ||| Sbjct 359497 ATTAAACGTTGTTGGTCCGGGGGTATACCTTCCTTGTCTTGGATTTTGGCCTTCA-CATT 359555 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | ||||| ||| || || || | || || ||||| || |||| ||||| || Sbjct 359556 GTCGATTGTGTCTGATGACTCTACCTCTAGGGTTATTGTTTTCCCCGTTAGGGTTTTCAC 359615 Query 33738 AAAGATCTGCATAGTT 33753 ||||||||||||| || Sbjct 359616 AAAGATCTGCATATTT 359631 >seq25634 Length=602113 Score = 102 bits (112), Expect = 5e-17 Identities = 154/215 (72%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || || ||||||||| || || ||||| | || |||||| | || || Sbjct 348759 CACCAAGTGGAGTGTAGACTCTTTTTGAATATTATAATCAGCAAGAGTGCGTCCATCCTC 348700 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | ||||| || ||||| ||||| | |||||||||| | || | ||| || ||||| Sbjct 348699 GAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCCTCCTTGTCTTG 348640 Query 33660 AATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGAT---TCCACGTCAACCGTGATCG 33715 |||||| ||| ||||| |||| ||||| ||| || || || | ||||| | Sbjct 348639 AATTTTGGCTTT-AACATTGTCAATAGTGTC---TGAACTCTCAACTTCCAAGGTGATAG 348584 Query 33716 TTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || || | || |||||||||||||||||| Sbjct 348583 TCTTGCCAGTAAGGGTCTTTACAAAGATCTGCATA 348549 >seq25716 Length=1210045 Score = 98.7 bits (108), Expect = 7e-16 Identities = 152/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || ||||| ||| || || || |||||||| | |||||||| | || ||| Sbjct 962311 ACCAAGTGAAGAGTAGACTCCTTCTGAATATTGTAATCAGCAAGTGTGCGGCCATCCTCC 962252 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||| || ||||| |||| | ||| || ||| |||| | ||| ||||| || Sbjct 962251 AGCTGTTTACCAGCAAAGATCAGCCTCTGTTGGTCTGGCGGGATACCCTCTTTATCTTGG 962192 Query 33661 ATTTTCTGTTTCAACATAGTCAC-GGTGTC---GCTTGATTCCACGTCAACCGTGATCGT 33716 || || || | ||| |||| |||||| |||| ||||| |||| ||||| || Sbjct 962191 ATCTTAGCCTTGA-CATTGTCAATGGTGTCAGAGCTT---TCCACCTCAAGGGTGATAGT 962136 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || |||| || ||||| ||||||||||| Sbjct 962135 TTTGCCAGTTAGTGTCTTTACGAAGATCTGCAT 962103 >seq25744 Length=1702523 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||||||| || | ||||| ||| | ||| ||| || || |||||||| || | Sbjct 948294 CCTCCTCTCAATCGCAGCACCAGATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCGCA 948235 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| || |||| || | ||| ||||| || || || | || ||||| || | || Sbjct 948234 AGTGTACGGCCGTCTTCGAGTTGCTTTCCTGCGAAGATTAGCCGTTGCTGGTCCGGTGGG 948175 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || |||| ||| ||| | ||| ||| ||||| || Sbjct 948174 ATGCCTTCCTTGTCTTGGATCTTGGCCTTCA-CATTGTCGATGGTATCGGAGGATTCAAC 948116 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || || ||||| |||| ||||| || ||||||||||| Sbjct 948115 CTCTAGGGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 948068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328600791360960