Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq25760 226 4e-53 >seq25760 Length=3792821 Score = 226 bits (250), Expect = 4e-53 Identities = 384/546 (70%), Gaps = 14/546 (3%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792 ||||| |||| || ||| ||||||| |||| |||| || |||||||||||| | Sbjct 708501 AACCCAGACCGATTCTGTA-TGTTCCCAATCCAATACCCAGAAATTTGGGAAATGTACAA 708443 Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGA-CACGGTC 1455851 ||||| |||| || || |||||||| || ||||| || || ||| || | | ||| Sbjct 708442 AAAAG-CCGAAGCATCATTTTGGACGGCAGAGGAAGTGGATCTCTCTCAAGATCTCCGTC 708384 Query 1455852 CACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTT 1455911 |||||| || || | ||| || || |||||| |||||||||||||| || Sbjct 708383 -ACTGGGAATCCCTAACTCCCGATGAAAAGCACTTCATCTCTCACGTCCTCGCCTTCTT- 708326 Query 1455912 CGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCA 1455971 ||||||| ||| || ||||| || ||||| |||||||| |||||||||||||| || Sbjct 708325 CGCCGCCTCCGACGGTATCGTCCTTGAAAACCTCGCCGGCCGTTTTATGAAAGAGGTTCA 708266 Query 1455972 ATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGA 1456031 | || | ||||| ||| || ||||| ||||| ||||| || || |||||||||||||| Sbjct 708265 AGTGGCTGAGGCGCGTGCTTTCTACGGTTTCCAAATCGCTATTGAGAACATCCACTCTGA 708206 Query 1456032 AACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTT 1456091 || ||||| || || | || || || |||| ||| | || ||| ||| | || Sbjct 708205 AATGTACTCTCTTTTGTTGGAGACTTATATCAAAGACTCCAATGAAAAGAACCGTTTGTT 708146 Query 1456092 TCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGAT 1456151 || ||| ||||| ||||| || | | ||| || || || ||||| |||| ||||| Sbjct 708145 TCACGCTATCGAGACGGTTCCTTGCATAGCGAAGAAAGCGGAGTGGGCTTTGAAATGGAT 708086 Query 1456152 CAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGG 1456209 || ||| || | ||||| ||| || | | | || || | || || || Sbjct 708085 ------AGACGGCTCGGAATCTTTTGCTGAGAGGATTATTGCTTTCGCTTGTGTTGAAGG 708032 Query 1456210 CATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCC 1456269 || || ||||| || ||||||||||| || |||||||| || ||||| || | ||||| Sbjct 708031 GATTTTCTTCTCTGGAAGTTTCTGCGCGATATTTTGGCTTAAAAAGCGTGGGTTAATGCC 707972 Query 1456270 CGGTCT 1456275 ||||| Sbjct 707971 GGGTCT 707966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175326311297606