Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq25760 214 2e-50 seq25599 143 4e-29 seq24687 123 3e-23 >seq25760 Length=3792821 Score = 214 bits (236), Expect = 2e-50 Identities = 581/885 (66%), Gaps = 6/885 (1%) Strand=Plus/Plus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370 |||||||| || ||| || || || ||||| | ||||| ||||||||||| || ||| Sbjct 707603 GACATAACAGCCGCTTTCTGATACTCTCCAACTCTCTTCTCAAAAAAATTAGTCTTCCCT 707662 Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAAT 39430 | || || ||||| ||||||| ||||| | ||||||| | || | Sbjct 707663 TGTAAACTAATCAGCTCCATCCAATCAAAAGGATTTGACACATTATACTCCTTGCCGCAC 707722 Query 39431 CCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAA 39490 || | | | ||| || ||||||||||| || || || |||| | || | | Sbjct 707723 CCAAGCGCACCCAACAACCTGTCTGCAACAAACTCAATATACTGACTCATTAACTCCCCA 707782 Query 39491 TTCATTCCTATGA--GTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTA 39548 ||||| || | | | || || || || || || |||||| | ||||||| | Sbjct 707783 TTCATCCCCACCAACGCGCAA--GGAAGCGCGTCACATACAAACTCCCTCTCGATGTTCA 707840 Query 39549 CGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAA 39608 | || ||| | ||| | || ||| |||||| | | | ||| | | Sbjct 707841 CCGCATCTCGCACTATTCCCTTCACGCGCTCCTCACTCAATTTTTTCTTTAACAGACTGT 707900 Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 | || || || ||||| || || |||| ||||||||||| ||||| ||||| |||| Sbjct 707901 AAATCAAACACGCGAAATCGCAGTGTAAGCCCTCATCTCGTGAGATTAACTCGTTTGAAA 707960 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCA 39727 |||| || || ||||||| ||||||||||| ||||||||||| || ||| ||| |||| Sbjct 707961 ATGTCAGACCCGGCATTAACCCACGCTTTTTAAGCCAAAATATCGC-GCAGAAACTTCCA 708019 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 || ||||| || ||||| || || || |||| || ||||| | || | Sbjct 708020 GAGAAGAAAATCCCTTCAACACAAGCGAAAGCAATAATCCTCTCAGCAAAAGATTCCGAG 708079 Query 39788 TTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATA 39847 | |||||| ||| ||||| || ||||||||| || ||||| | || || ||| Sbjct 708080 CCGTCTATCCATTTCAAAGCCCACTCCGCTTTCTTCGCTATGCAAGGAACCGTCTCGATA 708139 Query 39848 GCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTA 39907 || | ||| | | | ||||||| ||||| | ||| || || | || ||| Sbjct 708140 GCGTGAAACAAACGGTTCTTTTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGAGAG 708199 Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 39967 |||||||| || |||||||| ||||| || || || || ||||| ||| | || ||| Sbjct 708200 TACATTTCAGAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAGAAAGCACGCGCCTCA 708259 Query 39968 GTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTA 40027 | | ||| |||||| ||| | | || | |||||| || || || || Sbjct 708260 GCCACTTGAACCTCTTTCATAAAACGGCCGGCGAGGTTTTCAAGGACGATACCGTCGGAG 708319 Query 40028 GCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTC 40087 ||||| || || || | || || || || | ||||||||||| || | | | Sbjct 708320 GCGGCGAAGAAGGCGAGGACGTGAGAGATGAAGTGCTTTTCATCGGGAGTTAGGGATTCC 708379 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 |||| | || ||||| || | ||| ||||| || || |||||||| || || || || Sbjct 708380 CAGTGACGGAGATCTTGAGAGAGATCCACTTCCTCTGCCGTCCAAAATGATGCTTCGGCT 708439 Query 40148 TTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATA 40192 ||||||||||| | ||| || || | ||||| ||||| || ||| Sbjct 708440 TTTTTGTACATTTCCCAAATTTCTGGGTATTGGATTGGGAACATA 708484 >seq25599 Length=502261 Score = 143 bits (158), Expect = 4e-29 Identities = 169/228 (74%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 69748 TTTCCTCCC---TGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATA 69804 ||||||||| ||||| | ||| | ||||||| |||| | |||| ||||| |||| | Sbjct 182325 TTTCCTCCCCCTTGATCAACGTAGCGAGCAGTGTCATTAAACACTCGAAGCATGGGAACA 182266 Query 69805 ATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTA 69864 |||||||| |||| |||||||| || ||||| |||| ||| | || |||| ||| Sbjct 182265 ATACCATTTGATTCCCCATTTGTCCCGCAAATAAAACTGCCTGTAGCACGAACGTTATGC 182206 Query 69865 ATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCA 69924 | ||| ||||| |||||||| || | || || | |||||| ||||| |||||| Sbjct 182205 ACAGAAAGACCAATTCCTCCAGCAACCTTGCTAATAACAGCACACTCCTTCAAAGTGTCA 182146 Query 69925 TATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 |||| ||||| |||||||||||| ||||| |||||| |||||| Sbjct 182145 AATATGCCCTCGATGCTATCATCTTTCATGCACCCAAGAAAGCAGCTA 182098 Score = 86.0 bits (94), Expect = 9e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || ||||| || |||||| |||| |||| |||||| |||||| || || | ||| ||| Sbjct 182816 TCAAATTCTTCACCCCAACAATCAGCCAAACCAGGAGCTTCATTAGGGCAAAACAAAGAC 182757 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-AA 69635 || ||||| | |||| || |||||| ||||| |||||||||||||| ||| || Sbjct 182756 CAGCTGCCATCACCTCGGACTCTTTCCATAAAGAGATCAGGAATCCAAAGAGC-ATAGAA 182698 Query 69636 GAGATCTCTGGTTCTATTTTCTTC 69659 | |||||| | || | |||||| Sbjct 182697 CAAATCTCTAGCTCGACGTTCTTC 182674 >seq24687 Length=27406 Score = 123 bits (136), Expect = 3e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | |||||| | ||| | || || | ||| |||| |||||| Sbjct 5054 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTTAACATTGGAACAATACC 5113 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | ||||||||||| |||||| || ||| | || |||||||| |||||| Sbjct 5114 ATTAGATGTCCCATTTGTTCCTCGAATATAGCTGCCTGTGGCACGAATATTGTGAATAGA 5173 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || ||| ||| | |||||| || | || ||||| || Sbjct 5174 GACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTTAGAGTATCATAAAT 5233 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || || ||||||||| ||||| | | ||| |||||| Sbjct 5234 GCCTTCAATACTATCATCTTTCATGCACACCAAAAAGCAGCTA 5276 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| ||||| || | || ||||| || ||||||||||| | ||| | || | | Sbjct 5436 GTTCCAGCATTGAACAGAGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCAAGTGG 5495 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||| ||| |||| || ||||| || ||||||||| | || || | ||||| | Sbjct 5496 TAGGTTTTGATAACTGAATCAATATCATCCTTATGAATTCCAACAGCAACCCTCATCAGC 5555 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || ||||| | |||||| || | | ||| || ||||| || | |||||| Sbjct 5556 ATGTGTTGAGGCCTTTCTACAACCTTCCCTTGGACTTTTAAGAGGTAGGACCTCTCCAGA 5615 Query 70171 GTTTTAAACCCAAAATA 70187 || || |||||||| || Sbjct 5616 GTCTTGAACCCAAAGTA 5632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686687589607320