Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq25760 210 2e-49 >seq25760 Length=3792821 Score = 210 bits (232), Expect = 2e-49 Identities = 400/581 (69%), Gaps = 6/581 (1%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||| ||||| | || || ||| |||||||||||||||| | || ||||||| Sbjct 708482 TGTTCCCAATCCAATACCCAGAAATTTGGGAAATGTACAAAAAAGCCGAAGCATCATTTT 708423 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGA-CTTAG-CACATTGGATTGCATTAAAACC 43824 |||| ||||| ||||| ||| | || |||| || | ||| | ||| | | ||| || Sbjct 708422 GGACGGCAGAGGAAGTGGATCTCTCTCAAGATCTCCGTCAC-TGGGAAT-CCCTAACTCC 708365 Query 43825 ACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGT 43884 | ||||| || || || ||| || | || || || || || |||||| || || Sbjct 708364 CGATGAAAAGCACTTCATCTCTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGTATCGT 708305 Query 43885 CAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTT 43944 | |||||| | | | || ||| | |||| |||||| | | || || || ||| Sbjct 708304 CCTTGAAAACCTCGCCGGCCGTTTTATGAAAGAGGTTCAAGTGGCTGAGGCGCGTGCTTT 708245 Query 43945 TTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGA 44004 || || || ||||| || || || || || || || ||||||||| |||| || | || Sbjct 708244 CTACGGTTTCCAAATCGCTATTGAGAACATCCACTCTGAAATGTACTCTCTTTTGTTGGA 708185 Query 44005 TACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC 44064 || || |||||||| | || ||| | || |||||| | || || || || || || Sbjct 708184 GACTTATATCAAAGACTCCAATGAAAAGAACCGTTTGTTTCACGCTATCGAGACGGTTCC 708125 Query 44065 TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGG 44124 | || | ||||| || ||||| | ||||||||| | || ||||||| Sbjct 708124 TTGCATAGCGAAGAAAGCGGAGTGGGCTTTGAAATGGATAGACGGCTCGGAATCTTTTGC 708065 Query 44125 AGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TGCGG 44183 || | || | || || || ||| ||||| |||||||| || ||| || ||| | Sbjct 708064 TGAGAGGATTATTGCTTTCGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGTTTCTGC-G 708006 Query 44184 CCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAA 44243 | ||||||||| | || || || || || ||||| || |||| |||||||| ||||||| Sbjct 708005 CGATATTTTGGCTTAAAAAGCGTGGGTTAATGCCGGGTCTGACATTTTCAAACGAGTTAA 707946 Query 44244 TAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 | || ||||| |||||||| |||||||| || || ||| Sbjct 707945 TCTCACGAGATGAGGGCTTACACTGCGATTTCGCGTGTTTG 707905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397331204156815