Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq25310 122 7e-23 seq25573 107 2e-18 seq25716 102 7e-17 seq25706 98.7 8e-16 seq25319 89.7 4e-13 seq25634 86.0 5e-12 >seq25310 Length=177726 Score = 122 bits (134), Expect = 7e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-G 27077 ||||||| | ||| || | || ||||| | || || ||||| |||||||| || || | Sbjct 154708 TGCCTCCCCTCAATCGGAGAACTAAATGAAGAGTTGATTCTTTCTGAATATTATAATCTG 154767 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 | || || | |||||||| ||||| |||||| | || |||||||||||||| || Sbjct 154768 CAAGCGTCCTGC-CATCTTCGAGTTGTTTTCCGGCGAAGATCAGACGCTGTTGATCAGGA 154826 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | || || ||||| ||||||| ||| | | | || | ||||| | | || Sbjct 154827 GGGATGCCTTCCTTATCTTGGATCTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCG 154886 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || |||||||| | ||||| || || ||||| ||||||||||||||| Sbjct 154887 ACCTCAAGAGTTATGGTCTTGCCGGTGAGGGTTTTGACAAAGATTTGCATA 154937 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | ||| || | |||| ||| | || || |||||||| || || || || Sbjct 154480 TGCCCCCTCTCAATCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTATAATCAG 154539 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | | || |||||||| || |||||| | || || | ||| ||||| |||| Sbjct 154540 CAAGCGTCCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATTAGCCTCTGCTGATCAGGCG 154599 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||| || ||||| ||||||| || | | | || | ||||| | | || | Sbjct 154600 GGATACCTTCCTTATCTTGGATCTTGGCCTTGACGTTATCGATCGTGTCAGAGCTCTCCA 154659 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || |||||||| | |||||||||||||| ||||||||||||||||| Sbjct 154660 CCTCGAGAGTTATGGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 154708 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | |||||| | || | ||| | || || || || ||||| || || || Sbjct 166307 CCTCCTCTCAACCGAAGAACTAGATGAAGGGTCGACTCCTTCTGAATGTTATAATCTGCA 166366 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | |||||||| ||||| |||||| | || |||||||||||||| || || Sbjct 166367 AGGGTCCTGCCATCTTCGAGTTGTTTTCCGGCGAAGATCAGACGCTGTTGATCAGGAGGG 166426 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||||| ||| | | | || | ||||| | | || || Sbjct 166427 ATGCCTTCCTTGTCTTGGATCTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCGACC 166486 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||||||| | ||||| || || || || ||||||||||||||| Sbjct 166487 TCAAGAGTTATGGTCTTGCCGGTGAGGGTCTTGACAAAGATTTGCATA 166534 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 27013 AATTATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGT 27072 ||| || || ||||| | || | || | ||| | || || ||||| |||||||| | Sbjct 154246 AATCATCACCACCGCGAAGACGGAGCACAAGATGGAGGGTGGACTCTTTCTGAATATTAT 154305 Query 27073 AGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGAT 27132 | ||| || | || | || || | ||| || || || | || || | ||| |||| Sbjct 154306 AATCGGCCAGAGTACGTCCATCCTCTAACTGCTTCCCTGCAAATATCAGCCTCTGCTGAT 154365 Query 27133 CCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGG 27192 | || || | ||||| ||||| ||||||| |||| | || | || || | | Sbjct 154366 CAGGTGGAATCCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATCGTATCAGAGC 154425 Query 27193 CTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || ||||||||||| | ||||| || |||||||| |||||||| ||||| Sbjct 154426 TTTCGACCTCTAGAGTTATGGTCTTGCCGGTGAGAGTTTTTACAAAGATCTGCAT 154480 >seq25573 Length=429841 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| || ||||| || | || | || | || || || ||||| || ||||||||| Sbjct 359400 GCCGCCACGCAAGCGGAGCACAAGGTGGAGGGTTGATTCCTTTTGGATGTTGTAGTCGGC 359459 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | |||| |||| || ||||| || |||||| | || | ||| ||||| ||||| || Sbjct 359460 GAGCGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATTAAACGTTGTTGGTCCGGGGG 359519 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| || || || ||| ||| |||| | || | ||||||| | || || Sbjct 359520 TATACCTTCCTTGTCTTGGATTTTGGCCTTCACATTGTCGATTGTGTCTGATGACTCTAC 359579 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||| ||||| | ||| ||||| || |||||||||||||| |||||| Sbjct 359580 CTCTAGGGTTATTGTTTTCCCCGTTAGGGTTTTCACAAAGATCTGCATA 359628 >seq25716 Length=1210045 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| ||| | || || || ||||||||||||||||| | | ||||| | || || Sbjct 962995 ACCAGATGAAGGGTTGATTCCTTTTGAATATTGTAGTCCGCAAGGGTGCGCCCATCCTCT 962936 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| ||||| || |||| || | ||| || || || || | ||| ||||| || | Sbjct 962935 AGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGTGGGATACCTTCTTTGTCCTGG 962876 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | || | |||||| | | ||||| || || || || | || Sbjct 962875 ATCTTAGCCTTGACATTGTCAATAGTGTCAGAGCTCTCAACCTCCAGGGTGATTGTCTTA 962816 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||||||||||||||||||||| Sbjct 962815 CCAGTGAGAGTTTTCACAAAGATTTGCAT 962787 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTC 27097 ||||| || | ||||| || || ||||||||||| || || || |||| | || || Sbjct 962311 ACCAAGTGAAGAGTAGACTCCTTCTGAATATTGTAATCAG-CAAGTGTGCGGCCATCCTC 962253 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||||||||| || | || || | |||||| || ||||| | |||||||||||| Sbjct 962252 CAGCTGTTTACCAGCAAAGATCAGCCTCTGTTGGTCTGGCGGGATACCCTCTTTATCTTG 962193 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| || | | || | ||||| | | ||| || || || || |||| ||| Sbjct 962192 GATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTTTCCACCTCAAGGGTGATAGTTTT 962133 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || || || || ||||| ||||| Sbjct 962132 GCCAGTTAGTGTCTTTACGAAGATCTGCAT 962103 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTC 27097 |||||||| | ||||| |||||||||||||| ||||| || || | || | || || Sbjct 962539 ACCAAATGAAGGGTAGACTCTTTTTGAATATTATAGTCAG-CAAGTGTACGACCATCCTC 962481 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||| || || ||| | || || | ||| ||||| || || | ||| ||||| || Sbjct 962480 TAGCTGCTTGCCAGCGAATATCAGCCTCTGCTGATCAGGTGGAATACCTTCTTTGTCCTG 962421 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||| || | | || | ||||||| ||||| || || || || | || Sbjct 962420 AATCTTAGCCTTGACATTGTCAATGGTGTCTGAACTCTCAACCTCCAGTGTAATTGTCTT 962361 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || |||||||||||||||||||| Sbjct 962360 GCCAGTGAGGGTTTTCACAAAGATTTGCAT 962331 >seq25706 Length=1095516 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||||||||| || || ||| | | |||| |||||||||||||||| || Sbjct 699637 GTTGATTCTTTTTGAATGTTATAATCGGCTAAGGTGCGGCCGTCTTCGAGCTGTTTTCCT 699696 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | |||||||| || || || || || | || || || || ||| ||| |||| Sbjct 699697 GCGAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATTTTGGCTTTC 699756 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | |||| ||||| || || || || ||||| || | || || || || ||| Sbjct 699757 ACGTTGTCTATTGTGTCGCTGCTCTCCACCTCCAGAGTGATGGTCTTTCCTGTGAGGGTT 699816 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| || || ||||| Sbjct 699817 TTCACGAAAATCTGCAT 699833 >seq25319 Length=181645 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || |||||||| || ||||| | |||| | |||||| Sbjct 58789 ACCAAGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCAGCAAGAGTGCGACCATCTTCG 58730 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| || || | || | | |||||||| || || | ||||| || || | Sbjct 58729 AGCTGTTTTCCAGCAAAGATCAACCTTTGTTGATCTGGAGGGATCCCCTCCTTGTCTTGG 58670 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||||| | || | ||||||| | ||| || || || || || | ||| Sbjct 58669 ATCTTTGCTTTCACATTGTCGATGGTGTCTGAGCTTTCCACCTCAAGGGTGATGGTCTTG 58610 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || ||||| |||||||||||||| Sbjct 58609 CCAGTGAGGGTTTTAACAAAGATTTGCAT 58581 >seq25634 Length=602113 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| |||||||||||||| || || | |||| | || ||| Sbjct 348758 ACCAAGTGGAGTGTAGACTCTTTTTGAATATTATAATCAGCAAGAGTGCGTCCATCCTCG 348699 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| || || | || | | ||| ||||| || || | |||||| || || Sbjct 348698 AGCTGTTTCCCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGA 348639 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| ||| | | || | |||||||| |||||||| | || |||| ||| Sbjct 348638 ATTTTGGCTTTAACATTGTCAATAGTGTCTGAACTCTCAACTTCCAAGGTGATAGTCTTG 348579 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || |||||||| |||||| Sbjct 348578 CCAGTAAGGGTCTTTACAAAGATCTGCATA 348549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424800976308456