Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq25679 140 4e-28 seq25760 109 7e-19 seq25247 100 4e-16 seq25220 84.2 3e-11 seq25762 82.4 1e-10 >seq25679 Length=787315 Score = 140 bits (154), Expect = 4e-28 Identities = 184/254 (72%), Gaps = 6/254 (2%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 || || ||||| | | |||||| || |||||||| | || ||||| | | ||||| Sbjct 166690 TCCAGAATATCTGCTCTATTAGTTGCTGCAATAACAATGATACCAGTGTTACCCTCAAAA 166749 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | || || |||| ||| |||||||| ||||||||| | | | Sbjct 166750 CCATCCATTTCTGTCAATAGCTGGTTAAGTGTCTGTTCTCTTTCATCATTTCC---CCCA 166806 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| || | | | |||| | || || |||||||| ||||| | || |||||||| Sbjct 166807 CCAATGCCGGTGCCTCTTTGCCTTCCAACAGCATCAATTTCATCCACAAATACAATACAA 166866 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 ||| |||||| ||| ||| |||||||| || || || |||||| ||||||||| Sbjct 166867 GGTGCATTTTCTTTGGCCTTTTTGAAGAGATCACGGACTCTAGAGGCACCAACACCAACA 166926 Query 11720 AACATCTCCACAAA 11733 |||||||| ||||| Sbjct 166927 AACATCTCAACAAA 166940 >seq25760 Length=3792821 Score = 109 bits (120), Expect = 7e-19 Identities = 384/596 (64%), Gaps = 9/596 (2%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 ||||||||||| || || | || ||||| || ||||| ||||| | || ||||| Sbjct 707930 CCCTCATCTCGTGAGATTAACTCGTTTGAAAATGTCAGACCCGGCATTAACCCACGCTTT 707989 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | |||| | || |||||||| || |||||||| || || || ||||| || || Sbjct 707990 TTAAGCCAAAATATCGCGCAGAAACTTCCAGAGAAGAAAATCCCTTCAACACAAGCGAAA 708049 Query 122797 GCAAAAAGGCGTTCGGCGAAGGA--GCGAGACTTTGCATCAAACCATTTCATTGCCCATT 122854 |||| || | || || || || |||| | || | |||||||| ||||| | Sbjct 708050 GCAATAATCCTCTCAGCAAAAGATTCCGAG-----CCGTCTATCCATTTCAAAGCCCACT 708104 Query 122855 TCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTTTCAG 122914 ||| |||||| | || || || || || | ||| || | ||| || | ||||||||| Sbjct 708105 CCGCTTTCTTCGCTATGCAAGGAACCGTCTCGATAGCGTGAAACAAACGGTTCTTTTCAT 708164 Query 122915 ATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATTTCAT 122974 || || || || | || | ||| || || |||| || | | ||| Sbjct 708165 TGGAGTCTTTGATATAAGTCTCCAACAAAAGAGAGTACATTTCAGAGTGGATGTTCTCAA 708224 Query 122975 TATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCATCCGCAAAAT 123034 || | ||| | ||||||| | ||||| || | |||||||| | | |||| Sbjct 708225 TAGCGATTTGGAAACCGTAGAAAGCACGCGCCTCAGCCACTTGAACCTCTTTCATAAAAC 708284 Query 123035 TGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGGATGTACT 123094 | || || |||| || || || ||||| | || ||||| || |||| || Sbjct 708285 GGCCGGCGAGGTTTTCAAGGACGATACCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGAG 708344 Query 123095 TTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCAAGATCTTTGGACAAAT 123154 ||||| | |||||||| | | |||| | ||||| ||||||| || | || Sbjct 708345 AGATGAAGTGCTTTTCATCGGGAGTTAGGGATTCCCAGTGACGGAGATCTTGAGAGAGAT 708404 Query 123155 CAACTTCTTCCGCAGTCC-AATTGCTCATTTGAGCCTTTTTATAGAGTTCCCAGAGTTGT 123213 | ||||| || || |||| || || | || | || ||||| || | |||||| | || | Sbjct 708405 CCACTTCCTCTGCCGTCCAAAATGATGCTTCG-GCTTTTTTGTACATTTCCCAAATTTCT 708463 Query 123214 GGATACTTCAGGGGGAAGACTGTAAATCTGTTTAGGGTGGGGGCCAGAATAGGTTC 123269 || || | | ||||| | |||| || | || |||| || |||| ||||| Sbjct 708464 GGGTATTGGATTGGGAACATACAGAATCGGTCTGGGTTGGGAGCGAGAAGGGGTTC 708519 >seq25247 Length=147060 Score = 100 bits (110), Expect = 4e-16 Identities = 192/275 (70%), Gaps = 10/275 (4%) Strand=Plus/Minus Query 9285 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 9344 |||||| | ||| | ||||| ||||||| || || || | || ||||||||||| Sbjct 144224 AATTACAGGGAGGCGTACGGGTTGTTTGCCTGTAATGGGATATTGTTTAACCATGAATCT 144165 Query 9345 CCGAGACGAGGTGCAGACTTT-GTGACCATGAAGATTACCGAGGGTATCAAACAAATCAT 9403 || || ||||| | ||| ||| ||||| ||||| || || | || | |||| Sbjct 144164 CCAAGGCGAGGAG-AGAATTTCGTGACTCGAAAGATAACAAGGGCTGTCGGAAGGATCAA 144106 Query 9404 GAAGGG--TGAAAAGGAGTTCATTGAAT-TGGGTAACATAAACGCGGAGAGAGATTGGGG 9460 || || || |||| | | || | | || || | || ||| |||||||||||| Sbjct 144105 GATTGGGTTGCAAAGCAA---ACTGTTTCTAGGCAATTTGAATGCGTCGAGAGATTGGGG 144049 Query 9461 TCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCC-GACG 9519 | ||| ||| |||||||||||||||||| | ||| | |||||||| |||||| |||| Sbjct 144048 TTTCGCTGGGGATTATGTTGAAGCTATGTGGATGATGTTACAACAAGA-GAAGCCTGACG 143990 Query 9520 AATATGTAGTAGCAACGGGTGAGACCCATTCAGTG 9554 | ||||| || ||||| | ||| | ||| | ||| Sbjct 143989 ATTATGTTGTGGCAACTGAGGAGTCGCATACTGTG 143955 >seq25220 Length=137353 Score = 84.2 bits (92), Expect = 3e-11 Identities = 175/259 (68%), Gaps = 14/259 (5%) Strand=Plus/Minus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 |||||| || || ||||| || || ||||||| | || ||| | ||| ||| Sbjct 107343 ATCAAGAATTTCAGGTCGATTCGTAGCAGCAATAATAATAACTCCACTATCACCACTAAA 107284 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 |||||||| || || || || ||||| | ||||||||| |||||||||||| || Sbjct 107283 ACCATCCATTTCAGTAAGCAACTGATTTAATGTTTGTTCCCTCTCATCATTTCCT----- 107229 Query 11602 ACCACCA--GCACTG-----CGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAA 11654 |||||| || ||| | ||| | || || |||||||| ||||| || || || | Sbjct 107228 -CCACCAATGC-CTGTCCCTCTCTGCCTCCCAACAGCATCAATTTCATCGATAAAAACCA 107171 Query 11655 TACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 ||||||| ||| | || | | || | ||| | || ||| || || |||| Sbjct 107170 AACATGGTGAGTTTACCTTTGCCTTGTTGAATAAATCCCTGACTCTTGAAGCCCCTACAC 107111 Query 11715 CAACAAACATCTCCACAAA 11733 | ||||||||||| | ||| Sbjct 107110 CCACAAACATCTCAATAAA 107092 >seq25762 Length=4693355 Score = 82.4 bits (90), Expect = 1e-10 Identities = 187/282 (66%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 |||||||||||| || || | || || ||||| || |||||||| ||||||||| | Sbjct 4006680 AAAGCCATCCATTTCAGTCAACAACTGGTTAATGGTCTGTTCTCTTTCATCATTTCC--- 4006624 Query 11599 CATACCACCA------GCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGAC 11652 ||||||| || | | ||| | || || |||||||| |||||||| || || Sbjct 4006623 ---ACCACCAAGGCCTGCTCCTCTCTGCCTTCCAACAGCATCAATTTCATCAATAAACAC 4006567 Query 11653 AATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712 ||| || || ||| | ||| | || || | ||| | || || || || || Sbjct 4006566 AATGCAAGGAGCCTTTGCTTTGGCTTTATCGAACAAATCTCTCACTCTCGAAGCCCCAAC 4006507 Query 11713 ACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTC 11772 ||| ||||||| ||| ||||| | | || | || || |||||||| || ||| Sbjct 4006506 ACCCACAAACAACTCAACAAACTCAGATGCTGCACATGAGAAAAATGGGACTCCTGCTTC 4006447 Query 11773 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || || | |||| || | || ||||| || ||||| || Sbjct 4006446 TCCAGCAACTGCTCTAGCTAACAGTGTCTTCCCTGTACCAGG 4006405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627829750144800