Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq25679 107 2e-18 seq25760 98.7 1e-15 seq25762 96.9 4e-15 >seq25679 Length=787315 Score = 107 bits (118), Expect = 2e-18 Identities = 249/370 (67%), Gaps = 14/370 (4%) Strand=Plus/Plus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 ||||| || ||||| | | | ||| ||| || ||||| | || || || || Sbjct 166660 TCAAACCGCCCTGGCCTCAACAAGGCAGAGTCCAGAATATCTGCTCTATTAGTTGCTGCA 166719 Query 14126 ATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 14182 || |||| ||| || || |||| ||||| |||||||| || ||||| || || || Sbjct 166720 ATAACAATGATACCAGT---GTTACCCTCAAAACCATCCATTTCTGTCAATAGCTGGTTA 166776 Query 14183 ATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA---CCCGCACTGCGTTGCTTACCG 14239 | || ||||| | ||||||||| | | |||| || | | | |||| | || Sbjct 166777 AGTGTCTGTTCTCTTTCATCATTTCC---CCCACCAATGCCGGTGCCTCTTTGCCTTCCA 166833 Query 14240 ACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAG 14299 || || ||||||||||| | || || ||||| ||| |||||| ||| || ||| Sbjct 166834 ACAGCATCAATTTCATCCACAAATACAATACAAGGTGCATTTTCTTTGGCCTTTTTGAAG 166893 Query 14300 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAA 14359 | ||| || ||||| |||||| ||||| ||||||||||| ||||| | | | | | Sbjct 166894 AGATCACGGACTCTAGAGGCACCAACACCAACAAACATCTCAACAAACTCAGAACCTG-A 166952 Query 14360 CATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 14418 || | || || || ||| || |||||| || || || || || || |||||||| Sbjct 166953 TATGGAGAAAAATGGAACGCCAGCTTCACCAGCAATTGCCTTAGCTAGAAGAGTCTTCCC 167012 Query 14419 CGTCCCTGGT 14428 || |||||| Sbjct 167013 AGTTCCTGGT 167022 >seq25760 Length=3792821 Score = 98.7 bits (108), Expect = 1e-15 Identities = 178/256 (70%), Gaps = 7/256 (3%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 ||||| || || ||||| | || || || || |||||| ||||| | || ||||| Sbjct 707930 CCCTCATCTCGTGAGATTAACTCGTTTGAAAATGTCAGACCCGGCATTAACCCACGCTTT 707989 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | ||| || ||||| || || ||||||||||| ||||| || ||||| ||||| Sbjct 707990 TTAAGCCAAAATATCGCGCAGAAACTTCCAGAGAAGAAAATCCCTTCAACACAAGCGAAA 708049 Query 130154 GCAAAGAGACGCTCAGCAAAGGA-GCGGGACTTTGTATCAAACCACTTCATCGCCCACTG 130212 |||| | | ||||||||| || | | | | ||| ||| |||| ||||||| Sbjct 708050 GCAATAATCCTCTCAGCAAAAGATTCCGAGCCGTCTAT----CCATTTCAAAGCCCACTC 708105 Query 130213 CGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGA 130272 ||| || ||| | || || || || |||| ||| || | ||| | |||||||| Sbjct 708106 CGCTTTCTTCGCTATGCAAGGAACCGTCTCGATAGCGTGAAACAAACGGTTCTTTTC-AT 708164 Query 130273 TGGA-TCTTTGATGTA 130287 |||| |||||||| || Sbjct 708165 TGGAGTCTTTGATATA 708180 >seq25762 Length=4693355 Score = 96.9 bits (106), Expect = 4e-15 Identities = 190/280 (68%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 |||||||||||| |||||||| | || || ||||| ||||| | ||||||||| || Sbjct 4006680 AAAGCCATCCATTTCAGTCAACAACTGGTTAATGGTCTGTTCTCTTTCATCATTTCCACC 4006621 Query 14212 CATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGAT 14268 |||| || || | | ||| | || || || ||||||||||| || || || || Sbjct 4006620 ---ACCAAGGCCTGCTCCTCTCTGCCTTCCAACAGCATCAATTTCATCAATAAACACAAT 4006564 Query 14269 ACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || ||| | ||| || || | ||||| ||||||| || || ||||| Sbjct 4006563 GCAAGGAGCCTTTGCTTTGGCTTTATCGAACAAATCTCTCACTCTCGAAGCCCCAACACC 4006504 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388 |||||||| ||| ||||| | | || | |||| || || ||||| | ||| || Sbjct 4006503 CACAAACAACTCAACAAACTCAGATGCTGCACATGAGAAAAATGGGACTCCTGCTTCTCC 4006444 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 || | |||| || | || |||||||| || || ||| Sbjct 4006443 AGCAACTGCTCTAGCTAACAGTGTCTTCCCTGTACCAGGT 4006404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618236040674280