Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq25679 136 5e-27 seq25760 109 6e-19 seq25247 104 3e-17 >seq25679 Length=787315 Score = 136 bits (150), Expect = 5e-27 Identities = 281/414 (68%), Gaps = 8/414 (2%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 || || ||||| | | ||| || || || || |||| ||||| || | | |||||| Sbjct 166690 TCCAGAATATCTGCTCTATTAGTTGCTGCAATAACAATGATACCAGTGTTACCCTCAAAA 166749 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 |||||||| |||||||| || ||||||| || ||||| | ||||||||| | | | Sbjct 166750 CCATCCATTTCTGTCAATAGCTGGTTAAGTGTCTGTTCTCTTTCATCATT---TCCCCCA 166806 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| || | | | |||| |||| || |||||||| ||||| | || || || || Sbjct 166807 CCAATGCCGGTGCCTCTTTGCCTTCCAACAGCATCAATTTCATCCACAAATACAATACAA 166866 Query 9734 GGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACA 9793 ||| |||||| || || |||||||| || || | ||| || ||||||||| Sbjct 166867 GGTGCATTTTCTTTGGCCTTTTTGAAGAGATCACGGACTCTAGAGGCACCAACACCAACA 166926 Query 9794 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9852 |||||||| ||||| | | | | | || | || || || || || |||||| || Sbjct 166927 AACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACGCCAGCTTCACCAGC 166985 Query 9853 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCG 9912 ||| || || ||||||||||| || || ||||| ||| | || || ||||| Sbjct 166986 AATTGCCTTAGCTAGAAGAGTCTTCCCAGTTCCTGGTGGACCAACCAGAAGAACACCTTT 167045 Query 9913 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 ||||| || ||| | || | ||||||| || | ||| ||||| || || Sbjct 167046 GGGAATGCGAGCCCCAACTGCAGTGAATCTCTCTGGCTTCTTTAGAAACTCAAC 167099 >seq25760 Length=3792821 Score = 109 bits (120), Expect = 6e-19 Identities = 168/238 (71%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 94701 TGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGA 94760 ||| ||||| | | ||| | || ||| | || ||||| || || ||||||||||| Sbjct 708163 TGAAAAGAACCGTTTGTTTCACGCTATCGAGACGGTTCCTTGCATAGCGAAGAAAGCGGA 708104 Query 94761 TTGGGCTATGAAGTGGTTTGATACAAAG-TCGCGTTCCTTTGCTGAGCGACTCTTCGCAT 94819 |||||| |||| ||| ||| | | ||| || ||||||||| | | | || | Sbjct 708103 GTGGGCTTTGAAATGG----ATAGACGGCTCGGAATCTTTTGCTGAGAGGATTATTGCTT 708048 Query 94820 TTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGA 94879 | || |||||||| || || ||||||||||| |||||||| || | |||||| || | Sbjct 708047 TCGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGTTTCTGCGCGATATTTTGGCTTAAAA 707988 Query 94880 AGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||| || | ||||| ||||| || || |||||| | ||||| || || ||||| Sbjct 707987 AGCGTGGGTTAATGCCGGGTCTGACATTTTCAAACGAGTTAATCTCACGAGATGAGGG 707930 >seq25247 Length=147060 Score = 104 bits (114), Expect = 3e-17 Identities = 193/275 (70%), Gaps = 10/275 (4%) Strand=Plus/Minus Query 7361 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 7420 |||||| | ||| | ||||| ||||||| || || || | || ||||||||||| Sbjct 144224 AATTACAGGGAGGCGTACGGGTTGTTTGCCTGTAATGGGATATTGTTTAACCATGAATCT 144165 Query 7421 CCGAGACGAGGTGCAGACTTT-GTCACAAAGAAGATTACCGAGGGTATCAAACAAATCAT 7479 || || ||||| | ||| ||| || || ||||| || || | || | |||| Sbjct 144164 CCAAGGCGAGGAG-AGAATTTCGTGACTCGAAAGATAACAAGGGCTGTCGGAAGGATCAA 144106 Query 7480 GAAGGG--TGAAAAGGAGTTCATTGAAT-TGGGTAACATAAACGCGGCGAGAGATTGGGG 7536 || || || |||| | | || | | || || | || ||| ||||||||||||| Sbjct 144105 GATTGGGTTGCAAAGCAA---ACTGTTTCTAGGCAATTTGAATGCGTCGAGAGATTGGGG 144049 Query 7537 TCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCC-GACG 7595 | ||| ||| |||||||||||||||||| | ||| | |||||||| |||||| |||| Sbjct 144048 TTTCGCTGGGGATTATGTTGAAGCTATGTGGATGATGTTACAACAAGA-GAAGCCTGACG 143990 Query 7596 AATATGTAGTAGCAACGGGTGAGACCCATACAGTG 7630 | ||||| || ||||| | ||| | ||||| ||| Sbjct 143989 ATTATGTTGTGGCAACTGAGGAGTCGCATACTGTG 143955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583072968150120