Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq25760 95.1 1e-14 seq25759 84.2 2e-11 >seq25760 Length=3792821 Score = 95.1 bits (104), Expect = 1e-14 Identities = 133/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 59931 AAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCAT 59989 ||||| || ||||| || | ||||| || || | | ||| ||||| | | | || Sbjct 708111 AAAGCGGAGTGGGCTTTGAAATGGATAGACGGCTCG-GAATCTTTTGCTGAGAGGATTAT 708053 Query 59990 AGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 ||||| || || || ||||| || ||||||||||| ||||| || || || ||||| Sbjct 708052 TGCTTTCGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGTTTCTGCGCGATATTTTGGCT 707993 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 ||||||||||| | |||||||| |||| || || |||||| | || || || || || Sbjct 707992 TAAAAAGCGTGGGTTAATGCCGGGTCTGACATTTTCAAACGAGTTAATCTCACGAGATGA 707933 Query 60110 GGGC 60113 |||| Sbjct 707932 GGGC 707929 >seq25759 Length=3402282 Score = 84.2 bits (92), Expect = 2e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 55582 TAAGGAGGGAGACTTAAGATCTCCTGTGCGCAAGCACGCGTGGGTTCGAACCCCAC 55637 ||||| || ||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 196749 TAAGGGGGAAGACTTAAGATCTTCTGTGCACAAGCACGCGTGGGTTCGAACCCCAC 196694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548348154444720