Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq25757 91.5 2e-13 seq25743 91.5 2e-13 seq25692 91.5 2e-13 seq25578 86.0 7e-12 seq25616 82.4 8e-11 >seq25757 Length=2710520 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 2167251 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2167310 Query 79684 TGAGCTACGAAAGCAAA 79700 |||||||||||||| || Sbjct 2167311 TGAGCTACGAAAGCCAA 2167327 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| || | | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1507731 TGCTTTCGTTGGGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1507672 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 1507671 TGAGCTACGAAAGC 1507658 >seq25743 Length=1611952 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 628428 CTGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 628487 Query 79683 TTGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 628488 CTGAGCTACGAAAGC 628502 >seq25692 Length=941965 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 516819 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 516760 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 516759 TGAGCTACGAAAGCA 516745 >seq25578 Length=446971 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 346443 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 346502 Query 79684 TGAGCTACGAAAGCAAAAGGGGAACTCTG 79712 ||||||| ||||||| | || | ||||| Sbjct 346503 TGAGCTATGAAAGCATACCGGAAGCTCTG 346531 >seq25616 Length=551996 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| ||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 46954 TGCTTTCATTGACAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 47013 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 47014 TGAGCTATGAAAGCA 47028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547039775927400