Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq25319 105 5e-18 seq25634 87.8 1e-12 seq25573 82.4 5e-11 >seq25319 Length=181645 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || ||||| ||||||||| ||| || |||| || || ||| | Sbjct 59721 ATGCAAATATTTGTCAAGACTCTGACTGGGAAAACTATCACTCTTGAAGTTGAGAGCTCA 59780 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || || ||||| ||||| ||||| |||| ||| | Sbjct 59781 GATACCATTGACAAT--GTGAAGGCTAAAATCCAGGACAAGGAAGGGATTCCACCGGACC 59838 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || ||||| || || |||||||| || | || | | || | ||||||| Sbjct 59839 AGCAAAGGCTGATCTTTGCTGGGAAGCAATTGGAGGATGGCCGAACCCTGGCAGATTACA 59898 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| || ||||| | || ||||| | ||||| || Sbjct 59899 ACATCCAGAAGGAGTCTACATTGCACCTTGTCCTGCGTCTCCGTGGTGG 59947 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || ||||||||||||||| ||||| | || || || ||| | Sbjct 59493 ATGCAGATATTTGTTAAGACTCTTACTGGGAAAACCATTACCTTGGAGGTTGAGAGCTCT 59552 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | ||| || || ||||| |||||||| || |||| ||| | Sbjct 59553 GACACCATTGATAAT--GTGAAGGCTAAAATTCAGGACAAAGAGGGGATTCCACCGGATC 59610 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| |||||||| ||||| || | || || | | | | ||| | || || | Sbjct 59611 AGCAAAGGTTGATTTTTGCAGGAAAGCAGCTTGAAGATGGAAGGACTTTGGCTGACTATA 59670 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || || || | |||||||| |||||| | ||||| || Sbjct 59671 ACATCCAGAAGGAATCAACCCTTCATTTGGTGTTGCGTCTCCGTGGTGG 59719 >seq25634 Length=602113 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| |||||||| || ||||| || ||| || |||| || |||||| | Sbjct 348322 ATGCAAATTTTCGTGAAAACCCTAACTGGCAAGACTATCACCCTTGAGGTAGAAAGCTCA 348381 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| || ||| || || ||||| || ||| |||| ||| | Sbjct 348382 GACACTATTGACAAT--GTAAAAGCTAAGATTCAAGACAAGGAGGGTATTCCCCCGGACC 348439 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | | |||||||| || || || | || || | ||||| | | | ||||| | Sbjct 348440 AGCAAAGACTGATTTTTGCTGGCAAGCAGCTTGAGGATGGACGCACCCTTGCTGATTATA 348499 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||||||||| || ||| | || ||||| Sbjct 348500 ACATCCAAAAGGAATCAACTCTCCACTTGGT 348530 >seq25573 Length=429841 Score = 82.4 bits (90), Expect = 5e-11 Identities = 162/235 (69%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--A 27844 || ||||| || ||||||||||| || || |||||| || || | || || || | Sbjct 359630 AATATGCAGATCTTTGTGAAAACCCTAACGGGGAAAACAATAACCCTAGAGGTAGAGTCA 359571 Query 27845 GCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || || || ||||| || || ||||| ||||| |||||| | || || Sbjct 359570 TCAGACACAATCGACAAT--GTGAAGGCCAAAATCCAAGACAAGGAAGGTATACCCCCGG 359513 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGAT 27963 | || ||||| ||||| || |||||||| || | || |||| |||| ||| | |||| Sbjct 359512 ACCAACAACGTTTAATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGCACGCTCG-CCGAC 359454 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 |||||||||||||| || || | || | || | || ||||||||||||| Sbjct 359453 TACAACATCCAAAAGGAATCAACCCTCCACCTTGTGCTCCGCTTGCGTGGCGGCG 359399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355750663988301