Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq25706 100 2e-16 seq25634 95.1 1e-14 >seq25706 Length=1095516 Score = 100 bits (110), Expect = 2e-16 Identities = 144/198 (73%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 |||||||| || ||||||||||| | || || |||| || |||||||| || || || Sbjct 699643 TCTTTTTGAATGTTATAATCGGCTAAGGTGCGGCCGTCTTCGAGCTGTTTTCCTGCGAAG 699702 Query 39154 ATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || ||||| |||||||| |||||| | | || ||||| |||||| ||| | ||| Sbjct 699703 ATGAGACGTTGCTGGTCTGGTGGG-ATTCCTTCCTTGTCTTGGATTTTGGCTTTCA-CGT 699760 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || ||||| |||||| |||| ||||| | ||||| || || ||||| | Sbjct 699761 TGTCTATTGTGTCGCTGCTCTCCACCTCCAGAGTGATGGTCTTTCCTGTGAGGGTTTTCA 699820 Query 39272 CAAAGATTTGCATCTTTA 39289 | || || ||||||| || Sbjct 699821 CGAAAATCTGCATCTGTA 699838 >seq25634 Length=602113 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| || || || || ||||| |||||||||||||| | || || Sbjct 348987 CACCAAGTGGAGGGTGGATTCCTTCTGAATGTTATAGTCGGCAAGTGTTCGCCCATCCTC 348928 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 |||||| || || ||||| ||||| | |||||| || |||||| | || || ||||| Sbjct 348927 AAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATCCCT-TCCTTGTCTT 348869 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| | | | ||||| |||||| |||| || ||| | | Sbjct 348868 GGATCTTGGCCTTGACATTGTCAATGGTATCAGAACTCTCCACCTCCAAAGTAATAGTCT 348809 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || |||||||||||||| Sbjct 348808 TGCCGGTGAGGGTCTTCACAAAGATTTGCAT 348778 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || || ||||||||| ||||||||||| ||||| || ||| | || || Sbjct 348759 CACCAAGTGGAGTGTAGACTCTTTTTGAATATTATAATCAGCAAGAGTGCGTCCATCCTC 348700 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || ||||| || | | |||||| || | ||| | | ||| |||| | | Sbjct 348699 GAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCCTCCTTGT-CTT 348641 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || ||| | || | | | | | | || || ||| || |||| |||||| | | Sbjct 348640 GAATTTTGGCTTTAACATTGTCAATAGTGTCTGAACTCTCAACTTCCAAGGTGATAGTCT 348581 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || |||||||| ||||| Sbjct 348580 TGCCAGTAAGGGTCTTTACAAAGATCTGCAT 348550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429410728453619