Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq25706 125 5e-24 seq25634 120 2e-22 seq25310 107 1e-18 seq25319 104 2e-17 seq25716 84.2 1e-11 seq25337 82.4 5e-11 >seq25706 Length=1095516 Score = 125 bits (138), Expect = 5e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||||||||| ||||| || |||||||| || || || || Sbjct 699833 ATGCAGATTTTCGTGAAAACCCTCACAGGAAAGACCATCACTCTGGAGGTGGAGAGCAGC 699774 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| ||||| ||||| ||||| | || ||||| || Sbjct 699773 GACACAATAGACAACGTGAAAGCCAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAG 699714 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || || || ||||| || ||||||| ||||| |||| |||||| ||| Sbjct 699713 CAACGTCTCATCTTCGCAGGAAAACAGCTCGAAGACGGCCGCACCTTAGCCGATTATAAC 699654 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||||| || || Sbjct 699653 ATTCAAAAAGAATCAAC 699637 Score = 122 bits (134), Expect = 6e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||| | |||||||| || || ||||| |||||||| || Sbjct 699605 ATGCAGATCTTCGTCAAAACCTTGACGGGAAAGACCATTACTCTTGAAGTTGAGAGCAGC 699546 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || |||| | || ||||||||||| | || |||||||| Sbjct 699545 GACACTATTGATAATGTCAAGGCAAAGA-TTCAGGACAAAGAAGGAATTCCCCCAGATCA 699487 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | |||| ||||| || ||||| || ||||| | || ||||| | ||||| || Sbjct 699486 GCAAAGGCTAATCTTTGCTGGAAAACAGCTTGAAGATGGGCGTACTTTGGCTGATTATAA 699427 Query 23790 CATACAAAAAGAGTCCACA 23808 || || ||||| || ||| Sbjct 699426 TATCCAGAAAGAATCAACA 699408 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| ||||| ||| | |||||||| || || || | || || || || Sbjct 699377 ATGCAAATTTTTGTTAAGACCTTGACGGGAAAGACCATTACCTTGGAGGTAGAAAGCAGT 699318 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | || ||||||||||| | || |||||||| Sbjct 699317 GACACAATCGATAATGTCAAGGCGAAGA-TTCAAGACAAAGAAGGGATTCCACCAGATCA 699259 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || || || || || ||||| | | | ||||| | ||||| || Sbjct 699258 GCAGAGGTTGATTTTCGCAGGAAAGCAGCTTGAAGATGGAAGGACTTTGGCTGATTATAA 699199 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || || || ||| | || | || |||||| | || ||||| Sbjct 699198 CATTCAGAAGGAATCAACACTTCACCTTGTGTTAAGGCTTCGTGGAGG 699151 >seq25634 Length=602113 Score = 120 bits (132), Expect = 2e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| | |||||||| | Sbjct 348550 ATGCAGATCTTTGTAAAGACCCTTACTGGCAAGACTATCACCTTGGAAGTTGAGAGTTCA 348609 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| ||||| | |||| || ||||| || ||| | || |||||||| Sbjct 348610 GACACTATTGACAATGTTAAAGCCAAAA-TTCAAGACAAGGAGGGTATTCCCCCAGATCA 348668 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || ||||| || || || | ||||||| | | ||||| || Sbjct 348669 GCAGAGGTTGATCTTTGCTGGGAAACAGCTCGAGGATGGACGCACTCTTGCTGATTATAA 348728 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||||||||| ||| | || || || Sbjct 348729 TATTCAAAAAGAGTCTACACTCCACTTGGT 348758 >seq25310 Length=177726 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || |||||||| || || || || ||||| || || || | | Sbjct 166533 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAGACCATAACTCTTGAGGTCGAGAGCTCC 166474 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | ||||| || || ||||| ||||| | || || |||||| Sbjct 166473 GACACAATTGATAACGTAAAAGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGATCAA 166414 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || ||||| |||||||| ||||| | | || | | ||||| ||| Sbjct 166413 CAGCGTCTGATCTTCGCCGGAAAACAACTCGAAGATGGCAGGACCCTTGCAGATTATAAC 166354 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| || | ||| ||||| | ||||| ||||||| Sbjct 166353 ATTCAGAAGGAGTCGACCCTTCATCTAGTTCTTCGGTTGAGAGGAGG 166307 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||||||||| || || || || ||||| || || || | | Sbjct 154936 ATGCAAATCTTTGTCAAAACCCTCACCGGCAAGACCATAACTCTTGAGGTCGAGAGCTCC 154877 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | ||||| || || || || ||||| | || || |||||| Sbjct 154876 GACACAATTGATAACGTAAAAGCCAAGATCCAAGATAAGGAAGGCATCCCTCCTGATCAA 154817 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || ||||| |||||||| ||||| | | || | | ||||| || Sbjct 154816 CAGCGTCTGATCTTCGCCGGAAAACAACTCGAAGATGGCAGGACGCTTGCAGATTATAAT 154757 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||| || || | ||||||||| | | ||| | ||||| Sbjct 154756 ATTCAGAAAGAATCAACTCTTCATTTAGTTCTCCGATTGAGGGGAGG 154710 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || || || || || || || ||||| || | || Sbjct 166077 ATGCAGATATTCGTGAAGACATTGACAGGGAAGACCATAACACTGGAAGTGGAGAGCTCG 166018 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | ||| ||||||| || || || || | || || ||||| Sbjct 166017 GACACAATTGATAACGTGAAAGCAAAAATTCAAGATAAGGAGGGGATTCCACCTGATCAG 165958 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | |||||||| || || || |||| || | || || | | |||||||| Sbjct 165957 CAGAGGCTGATATTTGCAGGGAAGCAGTTGGAGGATGGGCGTACGCTTGCTGATTACAAT 165898 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 || || |||||||||||| | ||| Sbjct 165897 ATTCAGAAAGAGTCCACACTCCAT 165874 >seq25319 Length=181645 Score = 104 bits (114), Expect = 2e-17 Identities = 159/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 23598 TTAATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGA 23657 || |||| || | ||||| || || |||||||||||||| || || || ||||| || || Sbjct 58568 TTTATTATTTCAGATGCAAATCTTTGTTAAAACCCTCACTGGCAAGACCATCACCCTTGA 58627 Query 23658 AGTTGACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTG 23716 || || | | ||||| | || ||| | ||| | ||| || ||||| || || Sbjct 58628 GGTGGAAAGCTCAGACACCATCGACAATGTGAAAGC-AAAGATCCAAGACAAGGAGGGGA 58686 Query 23717 TACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTT 23776 | || ||||||||||| | || || ||||| || ||||| || ||||| | |||||| Sbjct 58687 TCCCTCCAGATCAACAAAGGTTGATCTTTGCTGGAAAACAGCTCGAAGATGGTCGCACTC 58746 Query 23777 TAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 | | || || ||||| ||||| ||||| || | || || ||| Sbjct 58747 TTGCTGACTATAACATTCAAAAGGAGTCAACCCTCCACTTGGTT 58790 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || ||||| || || || || || | || ||||| | | Sbjct 58809 ATGCAGATTTTTGTGAAGACTCTCACTGGCAAGACTATTACCTTAGAGGTTGAGAGCTCA 58868 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| ||||| | || || ||||| || || | || ||||| || Sbjct 58869 GACACAATTGACAATGTTAAAGC-CAAGATACAGGACAAGGAGGGAATCCCCCCAGACCA 58927 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| |||||||| ||||| || | || || | | || ||||| Sbjct 58928 GCAGAGGCTCATCTTTGCTGGCAAACAGCTGGAGGATGGCCGTACCCTCGCGGACTACAA 58987 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 58988 CATTCAGAAGGAGTCCAC 59005 >seq25716 Length=1210045 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||||||||| || || || || || || || ||||| | Sbjct 962331 ATGCAAATCTTTGTGAAAACCCTCACTGGCAAGACAATTACACTGGAGGTTGAGAGTTCA 962390 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | || |||||||||||| | || || ||||| Sbjct 962391 GACACCATTGACAATGTCAAGGCTAAGA-TTCAGGACAAAGAAGGTATTCCACCTGATCA 962449 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | ||||| || ||||| || || || || | || || | | || || || Sbjct 962450 GCAGAGGCTGATATTCGCTGGCAAGCAGCTAGAGGATGGTCGTACACTTGCTGACTATAA 962509 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||||||||| || | ||||| || Sbjct 962510 TATTCAAAAAGAGTCTACCCTTCATTTGGT 962539 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||||||||| || || || ||||| || || ||||| | || Sbjct 962559 ATGCAAATCTTTGTAAAAACCCTCACTGGCAAGACAATCACCCTGGAGGTTGAGAGCTCG 962618 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || ||| ||||| ||||| |||| ||||| || Sbjct 962619 GATACCATAGACAATGTCAAGGC-CAAGATTCAGGACAAGGAAGGGATACCACCAGACCA 962677 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || ||||| || | ||||| | | || ||||| Sbjct 962678 GCAGAGGCTGATCTTTGCGGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCTGACTACAA 962737 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || || ||||| || || || || Sbjct 962738 TATCCAGAAGGAATCCACTTTGCACTTGGT 962767 >seq25337 Length=191068 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||| || || || || || |||||||| || || | Sbjct 88928 AAGATGCAGATATTCGTGAAAACCCTAACTGGGAAGACAATAACTCTCGAGGTAGAGAGC 88987 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | || ||| | || | || | | ||||||||||| | || || || Sbjct 88988 AGTGATACCATCGACAATGTCAAGGCCAAGA-TCCAGGACAAAGAAGGCATTCCACCTGA 89046 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| || || || || || || ||||| ||||| | | ||||| | ||||| Sbjct 89047 CCAGCAGCGCTTGATCTTCGCTGGAAAGCAACTTGAAGATGGTAGAACTTTGGCTGATTA 89106 Query 23787 CAACATACAAAAAG 23800 ||| || || |||| Sbjct 89107 CAATATCCAGAAAG 89120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337903469527604