Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq25760 188 6e-43 >seq25760 Length=3792821 Score = 188 bits (208), Expect = 6e-43 Identities = 420/622 (68%), Gaps = 9/622 (1%) Strand=Plus/Plus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 |||||||| ||||| || || || || || |||| || | ||||| ||||| || Sbjct 707906 AAACACGCGAAATCGCAGTGTAAGCCCTCATCTCGTGAGATTAACTCGTTTGAAAATGTC 707965 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 | || |||||||| || | |||||||||||||||||| ||| || ||||| ||| Sbjct 707966 AGACCCGGCATTAACCCACGCTTTTTAAGCCAAAATATCGCGCAGAAACTTCCAGAGAAG 708025 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACC-CGAACGAGCTGGCTTTGTC 4723 || || ||||| || || || || | ||||| | | || || | ||| Sbjct 708026 AAAATCCCTTCAACACAAGCGAAAGCAA-TAATCCTCTCAGCAAAAGATTCCGAGCCGTC 708084 Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783 | |||||||| || ||||| | ||||| ||| | ||| |||| || | ||||| Sbjct 708085 T---ATCCATTTCAAAGCCCACTCCGCTTTCTTCGCTATGCAAGGAACCGTCTCGATAGC 708141 Query 4784 GTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 || ||| || | |||||| | ||||| |||||||| || | | || || Sbjct 708142 GTGAAACAAACGGTTCTTTTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGAGAGTA 708201 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTG 4902 ||||||||| || || || || ||||| || || || ||||| |||||| | || || | Sbjct 708202 CATTTCAGAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAGAAAGCA-CGCGCCTCAG 708260 Query 4903 TTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGG 4962 |||||||| || || ||| | | | | |||||| || |||||||| || Sbjct 708261 CCACTTGAACCTCTTTCATAAAACGGCCGGCGAGGTTTTCAAGGACGATACCGTCGGAGG 708320 Query 4963 CTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCC 5022 | || || || || | || ||||| || |||| || ||| || || | || || || Sbjct 708321 CGGCGAAGAAGGCGAGGACGTGAGAGATGAAGTGCTTTTCATCGGGAGTTAGGGATTCCC 708380 Query 5023 AGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTT 5082 |||| | | ||||| || | ||| ||||| || | |||||||| || ||||| |||| Sbjct 708381 AGTGACGGAGATCTTGAGAGAGATCCACTTCCTCTGCCGTCCAAAATGATGCTTCGGCTT 708440 Query 5083 TTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACA-AATCTGTTGTCG 5141 |||||||||| |||||| || || || || || || | || ||| |||| || | Sbjct 708441 TTTTGTACATTTCCCAAATTTCTGGGTATTGGATTGGGAACAT-ACAGAATCGGTCTGGG 708499 Query 5142 TTAGGTGTAAGAAGCGGTTCTT 5163 || || | ||||| ||||||| Sbjct 708500 TTGGGAGCGAGAAGGGGTTCTT 708521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426915512164079