Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq25760 210 3e-49 seq24687 98.7 1e-15 seq25599 96.9 5e-15 >seq25760 Length=3792821 Score = 210 bits (232), Expect = 3e-49 Identities = 399/584 (68%), Gaps = 4/584 (1%) Strand=Plus/Plus Query 48135 ATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAAT 48194 || ||||| || ||||| || || | || ||||||| ||||| ||||| |||||| Sbjct 707903 ATCAAACACGCGAAATCGCAGTGTAAGCCCTCATCTCGTGAGATTAACTCGTTTGAAAAT 707962 Query 48195 GTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAA 48254 || ||||| ||||||| ||||| ||||| ||||||||||| || |||| |||||| Sbjct 707963 GTCAGACCCGGCATTAACCCACGCTTTTTAAGCCAAAATATCGCGCAGAAACTTCCAGAG 708022 Query 48255 AAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTT- 48313 ||||| || ||||| || || || || ||| || ||||| | || | | || Sbjct 708023 AAGAAAATCCCTTCAACACAAGCGAAAGCAATAA-TC-CTCTCAGCAAAAGATTCCGAGC 708080 Query 48314 -GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAG 48372 || |||||| ||||| || || |||||| || ||||| | || || |||| Sbjct 708081 CGTCTATCCATTTCAAAGCCCACTCCGCTTTCTTCGCTATGCAAGGAACCGTCTCGATAG 708140 Query 48373 CATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTAT 48432 | | ||| | | ||| ||||||||| ||||| | ||||| || | |||||| | Sbjct 708141 CGTGAAACAAACGGTTCTTTTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGAGAGT 708200 Query 48433 ACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG 48492 ||||||| ||||| || || ||||| || || || || ||||| ||| | ||| || | Sbjct 708201 ACATTTCAGAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAGAAAGCACGCGCCTCAG 708260 Query 48493 TGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAG 48552 | || ||||| | ||| || | || | || ||| || || || || | Sbjct 708261 CCACTTGAACCTCTTTCATAAAACGGCCGGCGAGGTTTTCAAGGACGATACCGTCGGAGG 708320 Query 48553 CAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCC 48612 | || || || || | || || || || | ||||| | || ||| || | || Sbjct 708321 CGGCGAAGAAGGCGAGGACGTGAGAGATGAAGTGCTTTTCATCGGGAGTTAGGGATTCCC 708380 Query 48613 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTT 48672 ||| | || ||||| || | ||| ||||| || || |||||||||||||| || |||| Sbjct 708381 AGTGACGGAGATCTTGAGAGAGATCCACTTCCTCTGCCGTCCAAAATGATGCTTCGGCTT 708440 Query 48673 TTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATA 48716 |||| ||||| | ||| || || ||||||||||||||| ||| Sbjct 708441 TTTTGTACATTTCCCAAATTTCTGGGTATTGGATTGGGAACATA 708484 >seq24687 Length=27406 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | ||| || | ||| | || || |||||||||| |||||| Sbjct 5055 CCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTTAACATTGGAACAATACCA 5114 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||| ||||||||||| |||||| || || | || |||||||| ||| || Sbjct 5115 TTAGATGTCCCATTTGTTCCTCGAATATAGCTGCCTGTGGCACGAATATTGTGAATAGAG 5174 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || || | ||| || || | ||||| || || Sbjct 5175 ACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTTAGAGTATCATAAATG 5234 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || ||||| ||||| ||||| | | ||| |||||| Sbjct 5235 CCTTCAATACTATCATCTTTCATGCACACCAAAAAGCAGCTA 5276 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 77675 CAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTAT 77734 ||| || |||||||| ||||| || || || || | | | | ||||| || || Sbjct 4179 CAAGGCAATAGATGCCAGATTGCAGACAGCAGTTTCTGTTGGACTTGTATATTCAATAAT 4238 Query 77735 CTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATT 77794 ||||||||| ||||| | |||| |||||||||||||| || |||||||| ||| |||| Sbjct 4239 CTCGGTACACAGATTTGAAGATTTTATAGTGCCCAGATTCTGCTGGTTGCTTTTTCTATT 4298 Query 77795 GCATGAGTCCT 77805 | | | ||||| Sbjct 4299 GGAAGTGTCCT 4309 >seq25599 Length=502261 Score = 96.9 bits (106), Expect = 5e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 |||||||| || |||||| |||| |||| ||||| |||||| ||||| | ||| ||| Sbjct 182816 TCAAATTCTTCACCCCAACAATCAGCCAAACCAGGAGCTTCATTAGGGCAAAACAAAGAC 182757 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 ||| ||||| | |||| || ||||||||||||||| ||||| |||||| || Sbjct 182756 CAGCTGCCATCACCTCGGACTCTTTCCATAAAGAGATCAGGAATCCAAAGAGCATAGAAC 182697 Query 78045 AGATCTCGGGTTCTATGTTCTTC 78067 | ||||| | || | ||||||| Sbjct 182696 AAATCTCTAGCTCGACGTTCTTC 182674 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||||||||| || | || || | ||||| || |||||| || || | | | Sbjct 181951 GTTCCTGCATTGAAAAGAGTAGGGGTAGCATGTGTGAACCATCGTTGAGCCATCAAGTGA 181892 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||| || ||| ||||| | ||| || || || || | || || | ||||||| Sbjct 181891 TATGTTTTAACAGCAGATTCAACGTCATCTTTGTGGATACCAATAGCAACCCTCATCAAC 181832 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 || || || |||||||| || |||| || || ||||| | ||| || | || | | Sbjct 181831 ATGTGTTGTGGTCTTTCTACAATCTTCCCATCAATCTTCAAAAGGTAGGACCTCTCAAGA 181772 Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| || ||||| || | || ||| ||||| || ||||| || Sbjct 181771 GTTTTGAAGCCAAAGTAATCATAGTCAAAATCTCTGTCATAAATGAT 181725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694445090596320