Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq25760 201 2e-46 seq24687 125 1e-23 seq25599 96.9 5e-15 >seq25760 Length=3792821 Score = 201 bits (222), Expect = 2e-46 Identities = 396/584 (68%), Gaps = 4/584 (1%) Strand=Plus/Plus Query 46624 ATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAAT 46683 || ||||| || ||||| || || | ||| ||||||| ||||| ||||| |||||| Sbjct 707903 ATCAAACACGCGAAATCGCAGTGTAAGCCCTCATCTCGTGAGATTAACTCGTTTGAAAAT 707962 Query 46684 GTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAA 46743 || || || ||||||| ||||||||||| ||||||||||| || |||| |||||| Sbjct 707963 GTCAGACCCGGCATTAACCCACGCTTTTTAAGCCAAAATATCGCGCAGAAACTTCCAGAG 708022 Query 46744 AAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA--ACTGGCATCAT 46801 ||||| || ||||| ||| ||||| || | || ||||| | | | | | | Sbjct 708023 AAGAAAATCCCTTCAACACAAGCGAAAGCAATAATCCTCTCAGCAAAAGATTCCGAGCCG 708082 Query 46802 TATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAG 46861 | | ||||| | |||||| || || || ||| || ||||| | || || |||| Sbjct 708083 TCT--ATCCATTTCAAAGCCCACTCCGCTTTCTTCGCTATGCAAGGAACCGTCTCGATAG 708140 Query 46862 CATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTAT 46921 | | ||| | | ||| ||||||| ||||| | ||| || || | |||||| | Sbjct 708141 CGTGAAACAAACGGTTCTTTTCATTGGAGTCTTTGATATAAGTCTCCAACAAAAGAGAGT 708200 Query 46922 ACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 46981 ||||||| || || ||||| |||||||| || || || ||||| ||| | || |||| Sbjct 708201 ACATTTCAGAGTGGATGTTCTCAATAGCGATTTGGAAACCGTAGAAAGCACGCGCCTCAG 708260 Query 46982 TAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAG 47041 | || |||||| | ||| || | | | || ||| || || || || | Sbjct 708261 CCACTTGAACCTCTTTCATAAAACGGCCGGCGAGGTTTTCAAGGACGATACCGTCGGAGG 708320 Query 47042 CAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCC 47101 | || || || || | || || || || | |||||||||| ||| || | || Sbjct 708321 CGGCGAAGAAGGCGAGGACGTGAGAGATGAAGTGCTTTTCATCGGGAGTTAGGGATTCCC 708380 Query 47102 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTT 47161 ||| | || ||||| || | ||| ||||| || || ||||| ||||| || || |||| Sbjct 708381 AGTGACGGAGATCTTGAGAGAGATCCACTTCCTCTGCCGTCCAAAATGATGCTTCGGCTT 708440 Query 47162 TTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATA 47205 |||| ||||| | ||| || || | |||||||| || || ||| Sbjct 708441 TTTTGTACATTTCCCAAATTTCTGGGTATTGGATTGGGAACATA 708484 >seq24687 Length=27406 Score = 125 bits (138), Expect = 1e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | |||||| | ||| | || || |||||||||| ||| || Sbjct 5055 CCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTTAACATTGGAACAATACCA 5114 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| ||||||||||| |||||| || || ||||||||||| |||||| Sbjct 5115 TTAGATGTCCCATTTGTTCCTCGAATATAGCTGCCTGTGGCACGAATATTGTGAATAGAG 5174 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| ||| | |||||| || | || ||||| ||| Sbjct 5175 ACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTTAGAGTATCATAAATG 5234 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || ||||||||||| ||||| | | ||| |||||| Sbjct 5235 CCTTCAATACTATCATCTTTCATGCACACCAAAAAGCAGCTA 5276 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| ||||| |||| || ||||| |||||||||||||| | ||| | | | | Sbjct 5436 GTTCCAGCATTGAACAGAGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCAAGTGG 5495 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||| ||||||| || ||||| | ||||||||| ||||| || | ||||| | Sbjct 5496 TAGGTTTTGATAACTGAATCAATATCATCCTTATGAATTCCAACAGCAACCCTCATCAGC 5555 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || || ||||| | ||||||| ||| | | ||| || | ||| || | |||| | Sbjct 5556 ATGTGTTGAGGCCTTTCTACAACCTTCCCTTGGACTTTTAAGAGGTAGGACCTCTCCAGA 5615 Query 77174 GTTTTAAAACCAAAATA 77190 || || || ||||| || Sbjct 5616 GTCTTGAACCCAAAGTA 5632 >seq25599 Length=502261 Score = 96.9 bits (106), Expect = 5e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 |||||||| || |||||| |||| ||||||||||| |||||| || || | ||| ||| Sbjct 182816 TCAAATTCTTCACCCCAACAATCAGCCAAACCAGGAGCTTCATTAGGGCAAAACAAAGAC 182757 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 || ||||| | || | || ||||||||||||||| ||||| |||||| || Sbjct 182756 CAGCTGCCATCACCTCGGACTCTTTCCATAAAGAGATCAGGAATCCAAAGAGCATAGAAC 182697 Query 76640 AGATCTCGGGTTCTACGTTCTTC 76662 | ||||| | || ||||||||| Sbjct 182696 AAATCTCTAGCTCGACGTTCTTC 182674 Score = 89.7 bits (98), Expect = 7e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||||||||| || | ||||| | ||||| ||||||||| || || | | | Sbjct 181951 GTTCCTGCATTGAAAAGAGTAGGGGTAGCATGTGTGAACCATCGTTGAGCCATCAAGTGA 181892 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||| || | | | ||| | || || || || || | ||| || | ||||||| Sbjct 181891 TATGTTTTAACAGCAGATTCAACGTCATCTTTGTGGATACCAATAGCAACCCTCATCAAC 181832 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || || || |||| ||||||| |||| || || ||||| | ||| || | || | | Sbjct 181831 ATGTGTTGTGGTCTTTCTACAATCTTCCCATCAATCTTCAAAAGGTAGGACCTCTCAAGA 181772 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| || ||||| || | || ||| ||||| || ||||| || Sbjct 181771 GTTTTGAAGCCAAAGTAATCATAGTCAAAATCTCTGTCATAAATGAT 181725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712704808388160