Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq25706 116 3e-21 seq25319 89.7 4e-13 >seq25706 Length=1095516 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || || |||||||| ||||| || || |||||||| | ||| || |||| Sbjct 699605 ATGCAGATCTTCGTCAAAACCTTGACGGGAAAGACCATTACTCTTGAAGTTGAGAGCAGC 699546 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || ||| | || || ||| ||| ||||||||||| ||||| ||||| Sbjct 699545 GACACTATTGATAATGTCAAGGCAAAGATTCAGGACAAAGAAGGAATTCCCCCAGATCAG 699486 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 |||||||| || | ||| || ||||| | |||||| ||| |||| ||||||||| Sbjct 699485 CAAAGGCTAATCTTTGCTGGAAAACAGCTTGAAGATGGGCGTACTTTGGCTGATTATAAT 699426 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || |||||||| ||||| || | ||| | ||||| || || || Sbjct 699425 ATCCAGAAAGAATCAACACTTCACCTTGTGCTTCGTCTCCGTGGAGG 699379 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||||||| || || ||||| || || || ||||| |||| ||| ||| Sbjct 699149 ATGCAGATTTTTGTTAAGACTTTGACTGGAAAGACTATTACTTTGGAGGTGGAGAGTAGC 699090 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || || || ||| || || ||||| |||| ||||| Sbjct 699089 GATACTATTGATAATGTTAAGGCTAAGATTCAGGATAAGGAAGGGATTCCTCCTGATCAG 699030 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || || | |||| ||| || || ||| | |||||| | || |||| ||||||||| Sbjct 699029 CAGAGATTGATTTTTGCTGGGAAGCAACTTGAAGATGGAAGGACCTTGGCTGATTATAAT 698970 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || ||||| ||||| || || | || ||||||||||||||||| Sbjct 698969 ATCCAGAAAGAGTCTACTCTTCACCTTGTCTTGCGTCTGCGCGGTGG 698923 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| || || ||||| || || ||||||||| |||| ||| ||| Sbjct 699377 ATGCAAATTTTTGTTAAGACCTTGACGGGAAAGACCATTACCTTGGAGGTAGAAAGCAGT 699318 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | | | | || || || ||| ||||||||||| |||| ||||| Sbjct 699317 GACACAATCGATAATGTCAAGGCGAAGATTCAAGACAAAGAAGGGATTCCACCAGATCAG 699258 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||| | |||| || || || || | |||||| | ||| |||| |||||||| Sbjct 699257 CAGAGGTTGATTTTCGCAGGAAAGCAGCTTGAAGATGGAAGGACTTTGGCTGATTATAAC 699198 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTT 111311 || || || ||||| ||||| || | ||||| Sbjct 699197 ATTCAGAAGGAATCAACACTTCACCTTGTGTT 699166 >seq25319 Length=181645 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| || || | || || |||||||||||| |||| || | Sbjct 59493 ATGCAGATATTTGTTAAGACTCTTACTGGGAAAACCATTACCTTGGAGGTTGAGAGCTCT 59552 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || |||||| |||||||| || |||| ||||| Sbjct 59553 GACACCATTGATAATGTGAAGGCTAAAATTCAGGACAAAGAGGGGATTCCACCGGATCAG 59612 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 |||||| | |||| ||| || || || | |||||| | ||| |||| || ||||| Sbjct 59613 CAAAGGTTGATTTTTGCAGGAAAGCAGCTTGAAGATGGAAGGACTTTGGCTGACTATAAC 59672 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || ||||| || || ||||| ||||||||||| || ||||| Sbjct 59673 ATCCAGAAGGAATCAACCCTTCATTTGGTGTTGCGTCTCCGTGGTGG 59719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421678756951288