Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ricinus_20communis_20[refseq_20GCF_5F000151685.1_202011-07-07] 25,763 sequences; 350,621,860 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq25706 113 4e-20 seq25319 109 5e-19 seq25744 104 2e-17 seq25634 89.7 5e-13 seq25310 87.8 2e-12 seq25716 86.0 6e-12 >seq25706 Length=1095516 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | || || || || || || || ||||||||||| |||| Sbjct 699606 GCCACCGCGGAGACGGAGGACAAGGTGGAGGGTTGATTCTTTTTGAATGTTATAATCGGC 699665 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| |||| |||||||| || || ||||| || || || || ||||| | || Sbjct 699666 TAAGGTGCGGCCGTCTTCGAGCTGTTTTCCTGCGAAGATGAGACGTTGCTGGTCTGGTGG 699725 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | ||||||| | || |||| |||| ||| | | | |||||||| ||||| Sbjct 699726 GATTCCTTCCTTGT-CTTGGATTTTGGCTTTCACGTTGTCTATTGTGTCGCTGCTCTCCA 699784 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || || || || || || || |||||||||||||| Sbjct 699785 CCTCCAGAGTGATGGTCTTTCCTGTGAGGGTTTTCACGAAAATCTGCAT 699833 >seq25319 Length=181645 Score = 109 bits (120), Expect = 5e-19 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || ||| ||||||||||||||| ||||| | Sbjct 59491 CCACCACGGAGCCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCT 59432 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||| || || || || || | ||||||||| | |||| Sbjct 59431 AGGGTGCGACCATCTTCAAGCTGCTTCCCAGCAAAGATAAGCCTCTGTTGGTCTGGGGGA 59372 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCC 41812 | | |||||||||| ||| | || || | ||| | || | ||| | ||| ||| Sbjct 59371 ATACCCTCCTTGTCC-TGAATCTTGGCCTTAACATTGTCA-ATTGT-GTCCGAGCTCTCA 59315 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| || || || || || || || ||||| || ||||| ||||| Sbjct 59314 ACTTCCAAGGTAATAGTCTTGCCAGTGAGGGTCTTCACAAAAATTTGCAT 59265 Score = 105 bits (116), Expect = 6e-18 Identities = 159/222 (72%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||| || || ||| ||||||||||||||| ||||||| |||||| || Sbjct 59254 AGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTACGG 59195 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| ||||| || || || || | ||| ||||| | ||||| | ||| Sbjct 59194 CCATCCTCCAGCTGTTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATACCTTCC 59135 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCAC 41820 |||||| ||| | || || | ||| | | | |||||| ||| ||| || |||| Sbjct 59134 TTGTCC-TGAATCTTGGCCTTAACATTGTCAATAGTGTCCGAGCT---CTCAACTTCCAA 59079 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || || ||||| || ||||| ||||| Sbjct 59078 GGTAATAGTCTTGCCAGTGAGGGTCTTCACAAAAATTTGCAT 59037 Score = 102 bits (112), Expect = 8e-17 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||| || || ||| ||||||||||||||| ||||| | |||||| || Sbjct 59026 AGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCGAGGGTACGG 58967 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| ||||| || || || || | ||| ||||| | ||| | | |||| Sbjct 58966 CCATCCTCCAGCTGTTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATTCCCTCC 58907 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCCACCTCCACC 41821 |||||| || | || |||| ||| | || | ||| || || ||| ||||| | Sbjct 58906 TTGTCC-TGTATCTTGGCTTTAACATTGTCA-ATTGTGTCT-GAGCTCTCAACCTCTAAG 58850 Query 41822 GTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || || ||||| || ||||||||||| Sbjct 58849 GTAATAGTCTTGCCAGTGAGAGTCTTCACAAAAATCTGCAT 58809 Score = 86.0 bits (94), Expect = 6e-12 Identities = 162/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||||| ||| || || |||||||| ||||||||||| | Sbjct 59719 CCACCACGGAGACGCAACACCAAATGAAGGGTTGATTCCTTCTGGATGTTATAGTCAGCC 59660 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || | | || || |||||||| || || || |||| | || || |||| ||| Sbjct 59659 AAAGTCCTTCCATCTTCAAGCTGCTTTCCTGCAAAAATCAACCTTTGCTGATCCGGTGGA 59600 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCA-ACGACGACACAGTGTC---GCTCGACT 41810 | | ||| |||||| ||| |||| | ||||| | | | | ||||| ||| || Sbjct 59599 ATCCCCTCTTTGTCC-TGAATTTTAGCCTTCACATTATCA-ATGGTGTCAGAGCT---CT 59545 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | ||||||| || || ||||| || || || ||||| || || |||||||| Sbjct 59544 CAACCTCCAAGGTAATGGTTTTCCCAGTAAGAGTCTTAACAAATATCTGCAT 59493 >seq25744 Length=1702523 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||||||||| || ||||||||| ||||| ||||| | || || || |||| || Sbjct 948277 CACCAGATGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCGCAAGTGTACGGCCGTCTTC 948218 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||| ||||| || ||||| || || || || ||||||| || | || |||||||| Sbjct 948217 GAGTTGCTTTCCTGCGAAGATTAGCCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCTTG 948158 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 ||| || |||| || | | | || ||| || || ||||| | ||||| || | Sbjct 948157 GATCTTGGCCTTC-ACATTGTCGATGGTATCGGAGGATTCAACCTCTAGGGTTATGGTCT 948099 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||||| || || || ||||| |||||||| || Sbjct 948098 TACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 948065 >seq25634 Length=602113 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 ||||| || |||||||| || | |||||||| | || || ||||||||||| || || Sbjct 348512 TCCTTTTGGATGTTATAATCAGCAAGGGTGCGTCCATCCTCAAGCTGCTTGCCAGCAAAA 348453 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 ||||| | || ||||||| ||||| | |||||||| | ||| | || |||| || Sbjct 348452 ATCAGTCTTTGCTGGTCCGGGGGAATACCCTCCTTGT-CTTGAATCTTAGCTTTTACATT 348394 Query 41792 GAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTT 41847 | | | |||||| ||| || ||||| | || || || || || || || || || Sbjct 348393 GTCAATAGTGTCTGAGCT---TTCTACCTCAAGGGTGATAGTCTTGCCAGTTAGGGTTTT 348337 Query 41848 TACGAAAATCTGCAT 41862 |||||||| ||||| Sbjct 348336 CACGAAAATTTGCAT 348322 >seq25310 Length=177726 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || || |||||||||||||||||| || | ||||| | | || ||| Sbjct 166325 ACTAGATGAAGGGTCGACTCCTTCTGAATGTTATAATCTGCAAGGGTCCTGCCATCTTCG 166384 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 || || || |||||||| ||||| |||||||| || | || | || ||||||| | || Sbjct 166385 AGTTGTTTTCCGGCGAAGATCAGACGCTGTTGATCAGGAGGGATGCCTTCCTTGT-CTTG 166443 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | || |||| ||| | | |||||| ||| ||||| | ||||| || || Sbjct 166444 GATCTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCGACCTCAAGAGTTATGGTCTT 166503 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || ||||| || || || ||||| Sbjct 166504 GCCGGTGAGGGTCTTGACAAAGATTTGCAT 166533 >seq25716 Length=1210045 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || ||||| || |||||||| || || || || | Sbjct 963241 CCACCACGAAGACGAAGGACAAGGTGCAGGGTAGATTCCTTCTGGATATTGTAATCAGCA 963182 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| | | | || || |||||||| || || || |||| | ||| || || | || Sbjct 963181 AGGGTCCTCCCATCCTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGATCTGGTGGG 963122 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACA-CAGTGTCGCTCGACTCCAC 41814 | || |||||||| ||| ||||||| | || | || |||| || |||||| Sbjct 963121 ATGCCTTCCTTGTCT-TGAATTTTTGCCTTCACATTGTCAACAGTATCTGAACTCTCCAC 963063 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| ||||| || || || || || ||||| || || ||||||||| Sbjct 963062 CTCCAAGGTTATAGTCTTCCCTGTAAGGGTCTTCACAAAGATCTGCATG 963014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462155120775600