Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq6231 120 6e-22 seq1445 102 2e-16 seq61727 100 6e-16 seq560 100 6e-16 seq273341 98.7 2e-15 seq205964 98.7 2e-15 seq23035 98.7 2e-15 seq9012 98.7 2e-15 seq8696 98.7 2e-15 seq6729 98.7 2e-15 seq6501 98.7 2e-15 seq5662 98.7 2e-15 seq3047 98.7 2e-15 seq2331 98.7 2e-15 seq1775 98.7 2e-15 seq1707 98.7 2e-15 seq1214 98.7 2e-15 seq1025 98.7 2e-15 seq183 98.7 2e-15 seq161 98.7 2e-15 seq57642 93.3 9e-14 seq18826 89.7 1e-12 seq76447 87.8 4e-12 >seq6231 Length=25150 Score = 120 bits (132), Expect = 6e-22 Identities = 307/461 (67%), Gaps = 5/461 (1%) Strand=Plus/Plus Query 230171 CGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTT 230230 |||| || ||||| |||| |||| | || || || || || | || || ||||| | Sbjct 18376 CGTTCGCGGAGCGCATCGTGGCCTTTGCCTGCGTGGAGGGGATCTTCTTCTCGGGGAGCT 18435 Query 230231 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 230290 ||||||| || |||||||| || || ||||||| || || | || |||| Sbjct 18436 TCTGCGCGATATTTTGGCTCAAAAAGCGCGGGTTGATGCCCGGTCTGACCTTCTCGAACG 18495 Query 230291 AGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTA-TGTATTCAAAG 230349 |||| ||| || || || || || || | |||| || || | | || || Sbjct 18496 AGTTGATCTCGCGAGATGAAGGCCTACACTGCGACTTCG-CGTGCCTGCTCTACTCGCTC 18554 Query 230350 CTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409 |||| || ||||| | ||| || || |||| | || || ||||| | Sbjct 18555 CTCCGGATGAAGCTCACCGAGGAGCGCGTGAAGTCAATCGTCCGCGACGCGGTTGAGATA 18614 Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTA-TTGGCATGAACGCTGAACT 230468 || | |||||| | || ||||| | || || ||||||| |||| ||||||| ||| || Sbjct 18615 GAGAGAGAGTTCGTGTGCGACGCGTTACCGTG-CGCCTTAGTTGGAATGAACGGTGATCT 18673 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| | ||||||||||| ||||| || ||| | | | | ||| | || |||| ||| Sbjct 18674 GATGAGCCAGTACATCGAGTTCGTGGCTGACAGGCTGGTGGGTGCGTTGGGATACGGGAA 18733 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 | ||| | | ||||||| |||| | |||||||| ||| ||||| |||||||| Sbjct 18734 GATCTACGATGCGCAGAACCCATTTGATTGGATGGAGCTGATTAGTCTTCAGGGGAAGAC 18793 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAG-AGGCCT 230628 ||| ||||| || ||| | || | || || ||| |||||| Sbjct 18794 CAATTTCTTTGAGAAGAGAGTTGGGGAGTACCAGAAGGCCT 18834 >seq1445 Length=72904 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 11054 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 11113 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 11114 GCCCCACGGTGGGC 11127 >seq61727 Length=1022 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 501 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 442 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 441 CCCCACGGTGGGC 429 >seq560 Length=113671 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 15508 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 15449 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 15448 CCCCACGGTGGGC 15436 >seq273341 Length=212 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 122 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 63 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 62 CCCACGGTGGGC 51 >seq205964 Length=252 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 82 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 23 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 22 CCCACGGTGGGC 11 >seq23035 Length=4159 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 3747 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3688 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3687 CCCACGGTGGGC 3676 >seq9012 Length=17339 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 15445 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 15504 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 15505 CCCACGGTGGGC 15516 >seq8696 Length=18005 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 8241 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8300 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 8301 CCCACGGTGGGC 8312 >seq6729 Length=23368 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1342 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1401 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1402 CCCACGGTGGGC 1413 >seq6501 Length=24116 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 8763 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8822 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 8823 CCCACGGTGGGC 8834 >seq5662 Length=27482 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 15221 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 15162 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 15161 CCCACGGTGGGC 15150 >seq3047 Length=45570 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 44578 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 44637 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 44638 CCCACGGTGGGC 44649 >seq2331 Length=54596 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 3289 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3348 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3349 CCCACGGTGGGC 3360 >seq1775 Length=64698 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 18439 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18498 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 18499 CCCACGGTGGGC 18510 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 18771 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18830 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 18831 CCCACGGTGGGC 18842 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 19127 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 19186 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 19187 CCCACGGTGGGC 19198 >seq1707 Length=66116 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 5712 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5771 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5772 CCCACGGTGGGC 5783 >seq1214 Length=80162 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 77843 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 77784 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 77783 CCCACGGTGGGC 77772 >seq1025 Length=88092 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 68431 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 68372 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 68371 CCCACGGTGGGC 68360 >seq183 Length=165544 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 123419 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 123478 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 123479 CCCACGGTGGGC 123490 >seq161 Length=171658 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 93817 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 93876 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 93877 CCCACGGTGGGC 93888 >seq57642 Length=1123 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || ||||| |||||||||||| Sbjct 887 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTTGTGGGTTCGAGC 828 Query 165770 CCCACGATGGGCAT 165783 |||||| | ||||| Sbjct 827 CCCACGGTAGGCAT 814 >seq18826 Length=6073 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || ||||||| |||||||||| Sbjct 3827 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGAGGGTTCGAGC 3768 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 3767 CCCTCGGTGGGC 3756 >seq76447 Length=746 Score = 87.8 bits (96), Expect = 4e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||| ||||| || || |||| || |||||||||||||||| Sbjct 552 TGCCCGTCTAGCTCAGTTGGTACAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA- 494 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 493 CCCCACGGTGGGC 481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1053651296871360