Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq6231 127 2e-24 >seq6231 Length=25150 Score = 127 bits (140), Expect = 2e-24 Identities = 291/433 (67%), Gaps = 5/433 (1%) Strand=Plus/Minus Query 16960 CAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGT 17019 ||| || ||||| ||||| |||| || || |||| ||| | ||||| || || || Sbjct 18542 CAGGCACGCGAAGTCGCAGTGTAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGT 18483 Query 17020 CAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAA 17079 || ||||||||| || || || || | ||||||||||||| ||| ||| || || Sbjct 18482 CAGACCGGGCATCAACCCGCGCTTTTTGAGCCAAAATATCGCGCAGAAGCTCCCCGAGAA 18423 Query 17080 GAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTT 17139 ||| || ||||| ||| | ||||| || | | || || ||| ||||| || || Sbjct 18422 GAAGATCCCCTCCACGCAGGCAAAGGCCACGATGCGCTCCGCGAACGTCTCGGAGCCGT- 18364 Query 17140 ACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC 17199 ||| |||| | | |||||| ||| || | | ||| || || || | ||| Sbjct 18363 -CGA-TCCAGCGCAGGGCCCACTGGGCCTTCTTGGCGACGCAGGGGATGGTGTCGACGGC 18306 Query 17200 CTTAAATA-ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGT 17258 | || | | ||||| | | | ||| | ||||| || |||| ||| ||||||| Sbjct 18305 CCGGAAGAGACGGCTCTTCT-CGTCCGAGTCTTTAATATAGGTCTCGAGGAGAAGGCTGT 18247 Query 17259 ACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCG 17318 |||| ||||| || |||||||| || || ||||| || ||||| ||| || || |||| Sbjct 18246 ACATCTCGGAATGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCG 18187 Query 17319 CTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCG 17378 | || || ||| ||| || | || ||||| ||| |||||||||||| | Sbjct 18186 AGACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGAGAACGATGCCGTCGGAGG 18127 Query 17379 CGGCGAAAAACGC 17391 ||||||| || || Sbjct 18126 CGGCGAAGAAGGC 18114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515553877512960