Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6231 100 3e-16 >seq6231 Length=25150 Score = 100 bits (110), Expect = 3e-16 Identities = 231/343 (67%), Gaps = 10/343 (3%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| ||||||||||| || || |||| || || ||||| || || || || Sbjct 18538 CACGCGAAGTCGCAGTGTAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGA 18479 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253 |||||||| | || |||||||| ||||||||||| | |||| | | | || || ||||| Sbjct 18478 CCGGGCATCAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAGAAGCTCCCCGAGAAGAA 18420 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC----CGGCGCTGTCAT 24309 || || || || |||||||| | | | || | ||| ||| || ||| Sbjct 18419 GATCCCCTCCACGCAGGCAAAGGCCACGATGCGCTC-CGCGAACGTCTCGGAGCCGTC-- 18363 Query 24310 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 24369 ||||| | ||||| | ||||||||| || || || || || || | || Sbjct 18362 -GATCCAGCGCAGGGCCCACTGGGCCTTCTTGGCGACGCAGGGGATGGTGTCGACGGCCC 18304 Query 24370 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 24429 |||||| | | || || | ||||||| ||| || || | | ||| || |||| Sbjct 18303 GGAAGAGACGGCTCTTCTCGTCCGAGTCTTTAATATAGGTCTCGAGGAGAAGGCTGTACA 18244 Query 24430 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 24472 | || ||||| ||||| ||||| || || || || |||||||| Sbjct 18243 TCTCGGAATGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAA 18201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591436721794560